Factsheet for GSMUA_Achr4P06850_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytoskeleton, cytosol

Predictor Summary:

nucleus 1
extracellular 1
cytosol 1
plastid 2
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr4P24900_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G18100.1	GSMUA_Achr4P24900_001	AT1G12520.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0219200-01	Rice	extracellular	77.5	76.54
Solyc03g062890.2.1	Tomato	cytosol	73.12	75.0
EER95258	Sorghum	cytosol	75.0	73.62
TraesCS4D01G242800.2	Wheat	cytosol	75.0	73.17
VIT_08s0007g07280.t01	Wine grape	cytosol, mitochondrion	70.62	72.44
CDY25459	Canola	cytosol	73.75	72.39
Bra002133.1-P	Field mustard	cytosol	73.12	72.22
PGSC0003DMT400059417	Potato	cytosol	74.38	72.12
CDY38486	Canola	cytosol	72.5	71.6
AT5G18100.1	Thale cress	peroxisome	70.62	68.9
TraesCS4B01G243200.2	Wheat	cytosol	73.12	67.24
KRH08504	Soybean	cytosol	68.12	65.27
HORVU4Hr1G067390.2	Barley	cytosol	73.75	64.13
GSMUA_Achr7P03680_001	Banana	plasma membrane	58.12	61.18
GSMUA_Achr2P02380_001	Banana	cytosol	58.12	61.18
TraesCS4A01G065800.2	Wheat	unclear	73.12	55.19
Zm00001d028232_P012	Maize	cytosol	52.5	44.68
GSMUA_Achr8P09910_001	Banana	cytosol, peroxisome, plastid	36.88	39.86
GSMUA_Achr10P...	Banana	plastid	53.12	39.35
GSMUA_Achr9P20410_001	Banana	plastid	51.25	35.81

Protein Annotations

MapMan:10.2.2.3	Gene3D:2.60.40.200	GO:GO:0003674	GO:GO:0003824	GO:GO:0004784	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0005777
GO:GO:0006801	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009628	GO:GO:0009987
GO:GO:0016491	GO:GO:0019430	GO:GO:0046872	GO:GO:0055114	GO:GO:0071457	GO:GO:0071472
GO:GO:0071484	GO:GO:0071486	GO:GO:0071493	EnsemblPlantsGene:GSMUA_Achr4G06850_001	EnsemblPlants:GSMUA_Achr4P06850_001	EnsemblPlants:GSMUA_Achr4T06850_001
InterPro:IPR036423	UniProt:M0SLQ2	PFAM:PF00080	PRINTS:PR00068	ScanProsite:PS00332	PANTHER:PTHR10003
PANTHER:PTHR10003:SF31	InterPro:SOD-like_Cu/Zn_dom_sf	InterPro:SOD_Cu/Zn_/chaperone	InterPro:SOD_Cu/Zn_BS	InterPro:SOD_Cu_Zn_dom	SUPFAM:SSF49329
UniParc:UPI000294E6F5	:	:	:	:	:

Description

Superoxide dismutase [Cu-Zn] 2 [Source:GMGC_GENE;Acc:GSMUA_Achr4G06850_001]

Coordinates

chr4:+:5129398..5133768

Molecular Weight (calculated)

16372.3 Da

IEP (calculated)

7.419

GRAVY (calculated)

-0.214

Length

160 amino acids

Sequence
(BLAST)

001: MATGGNLKGV AIISGGDAVR GSLHFIHDTS TGHTHVRGRI SGLAPGLHGF HIHSFGDTTN GCNSTGPHFN PLNKSHGAPR DEERHAGDLG NIVANQDGVA
101: EVYLKDLQIP LCGPNSILGR AVVVHADPDD LGRGGHQLSK STGNAGARIG CGIIGLQSAV

Best Arabidopsis Sequence Match ( AT5G18100.1 )
(BLAST)

001: MEAPRGNLRA VALIAGDNNV RGCLQFVQDI SGTTHVTGKI SGLSPGFHGF HIHSFGDTTN GCISTGPHFN PLNRVHGPPN EEERHAGDLG NILAGSNGVA
101: EILIKDKHIP LSGQYSILGR AVVVHADPDD LGKGGHKLSK STGNAGSRVG CGIIGLQSSA DAKL

Arabidopsis Description

CSD3Superoxide dismutase [Cu-Zn] 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FK60]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.