Factsheet for Solyc03g062890.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 3
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	secretory
EpiLoc:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc08g079830.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G18100.1	Solyc08g079830.2.1	AT1G12520.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400059417	Potato	cytosol	98.08	92.73
VIT_08s0007g07280.t01	Wine grape	cytosol, mitochondrion	80.13	80.13
GSMUA_Achr4P06850_001	Banana	cytoskeleton, cytosol, plastid	75.0	73.12
KRH08504	Soybean	cytosol	77.56	72.46
Os03t0219200-01	Rice	extracellular	72.44	69.75
CDY25459	Canola	cytosol	71.79	68.71
Bra002133.1-P	Field mustard	cytosol	71.15	68.52
EER95258	Sorghum	cytosol	71.15	68.1
CDY38486	Canola	cytosol	70.51	67.9
AT5G18100.1	Thale cress	peroxisome	71.15	67.68
TraesCS4D01G242800.2	Wheat	cytosol	67.95	64.63
Solyc01g067740.2.1	Tomato	extracellular	62.18	63.82
TraesCS4B01G243200.2	Wheat	cytosol	67.95	60.92
HORVU4Hr1G067390.2	Barley	cytosol	67.95	57.61
TraesCS4A01G065800.2	Wheat	unclear	67.31	49.53
Zm00001d028232_P012	Maize	cytosol	51.92	43.09
Solyc11g066390.1.1	Tomato	extracellular, plastid	57.69	41.47

Protein Annotations

MapMan:10.2.2.3	Gene3D:2.60.40.200	GO:GO:0003674	GO:GO:0003824	GO:GO:0004784	GO:GO:0005488
GO:GO:0005507	GO:GO:0005575	GO:GO:0005576	GO:GO:0005615	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005773	GO:GO:0005777	GO:GO:0006801	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009628	GO:GO:0009987	GO:GO:0016491	GO:GO:0019430
GO:GO:0046872	GO:GO:0055114	GO:GO:0071457	GO:GO:0071472	GO:GO:0071484	GO:GO:0071486
GO:GO:0071493	InterPro:IPR036423	UniProt:K4BH38	PFAM:PF00080	PRINTS:PR00068	ScanProsite:PS00087
ScanProsite:PS00332	PANTHER:PTHR10003	PANTHER:PTHR10003:SF31	InterPro:SOD-like_Cu/Zn_dom_sf	InterPro:SOD_Cu/Zn_/chaperone	InterPro:SOD_Cu/Zn_BS
InterPro:SOD_Cu_Zn_dom	SUPFAM:SSF49329	EnsemblPlantsGene:Solyc03g062890.2	EnsemblPlants:Solyc03g062890.2.1	UniParc:UPI00027692A8	:

Description

Superoxide dismutase [Cu-Zn] 3 [Source:Projected from Arabidopsis thaliana (AT5G18100) UniProtKB/Swiss-Prot;Acc:Q9FK60]

Coordinates

chr3:-:32408080..32412787

Molecular Weight (calculated)

15871.9 Da

IEP (calculated)

7.077

GRAVY (calculated)

-0.022

Length

156 amino acids

Sequence
(BLAST)

001: MGNLKAVAVI SGNDSVQGSL QFIQQSNGVT HVRGRIIGLA PGLHAFHIHA LGDTTNGCNS TGPHFNPLKK DHGAPMDEVR HAGDLGNIVA GPNGVAEISI
101: SDMQIPLSGV HSILGRAVVV HADPDDLGRG GHELSKTTGN AGARVGCGVI GLQSSV

Best Arabidopsis Sequence Match ( AT5G18100.1 )
(BLAST)

001: MEAPRGNLRA VALIAGDNNV RGCLQFVQDI SGTTHVTGKI SGLSPGFHGF HIHSFGDTTN GCISTGPHFN PLNRVHGPPN EEERHAGDLG NILAGSNGVA
101: EILIKDKHIP LSGQYSILGR AVVVHADPDD LGKGGHKLSK STGNAGSRVG CGIIGLQSSA DAKL

Arabidopsis Description

CSD3Superoxide dismutase [Cu-Zn] 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FK60]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.