CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 1
cytosol 2
peroxisome 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	peroxisome
WoLF PSORT:	cytosol
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY16008
CDY21055
CDY26568
CDY58614

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G18100.1	CDY16008	AT1G12520.1	21798944
AT5G18100.1	CDY21055	AT1G12520.1	21798944
AT5G18100.1	CDY26568	AT1G12520.1	21798944
AT5G18100.1	CDY58614	AT1G12520.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY38486	Canola	cytosol	94.48	95.06
AT5G18100.1	Thale cress	peroxisome	85.89	85.37
GSMUA_Achr4P06850_001	Banana	cytoskeleton, cytosol, plastid	72.39	73.75
VIT_08s0007g07280.t01	Wine grape	cytosol, mitochondrion	69.33	72.44
Solyc03g062890.2.1	Tomato	cytosol	68.71	71.79
Os03t0219200-01	Rice	extracellular	68.71	69.14
EER95258	Sorghum	cytosol	68.71	68.71
PGSC0003DMT400059417	Potato	cytosol	69.33	68.48
KRH08504	Soybean	cytosol	69.33	67.66
TraesCS4D01G242800.2	Wheat	cytosol	67.48	67.07
CDX95028	Canola	cytosol	55.83	59.87
CDX93533	Canola	cytosol	55.83	59.87
TraesCS4B01G243200.2	Wheat	cytosol	63.8	59.77
CDY06331	Canola	cytosol	54.6	58.55
HORVU4Hr1G067390.2	Barley	cytosol	65.64	58.15
TraesCS4A01G065800.2	Wheat	unclear	64.42	49.53
CDY22663	Canola	plastid	53.37	45.79
Zm00001d028232_P012	Maize	cytosol	49.08	42.55
CDY30502	Canola	plastid	53.37	41.83
CDX77163	Canola	plastid	50.92	40.89

Protein Annotations

MapMan:10.2.2.3	Gene3D:2.60.40.200	GO:A0A078GJM2	UniProt:A0A078GJM2	EnsemblPlants:CDY25459	ProteinID:CDY25459
ProteinID:CDY25459.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004784	GO:GO:0005488	GO:GO:0006801
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0019430
GO:GO:0046872	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00032674001	InterPro:IPR036423	PFAM:PF00080	PRINTS:PR00068
ScanProsite:PS00332	PANTHER:PTHR10003	PANTHER:PTHR10003:SF31	MetaCyc:PWY-6854	InterPro:SOD-like_Cu/Zn_dom_sf	InterPro:SOD_Cu/Zn_/chaperone
InterPro:SOD_Cu/Zn_BS	InterPro:SOD_Cu_Zn_dom	SUPFAM:SSF49329	UniParc:UPI0004EEA081	:	:

Description

BnaC09g39740DSuperoxide dismutase [Cu-Zn] [Source:UniProtKB/TrEMBL;Acc:A0A078GJM2]

Coordinates

chrLK032175:-:387246..388865

Molecular Weight (calculated)

16802.8 Da

IEP (calculated)

7.728

GRAVY (calculated)

-0.267

Length

163 amino acids

Sequence
(BLAST)

001: MGAPNLRAVA LIAGDSNVRG CLHFTQDTSG TTHVTGKISG LSPGFHGFHI HSFGDTTNGC NSTGPHFNPL NRVHGPPDEV ERHAGDLGNI FAGPDGVAEI
101: SIKDKQIPLS GQYSILGRAV VVHGDPDDLG RGRGHKLSKS TGNAGARVGC GIIGLQSAVD PKL

Best Arabidopsis Sequence Match ( AT5G18100.1 )
(BLAST)

001: MEAPRGNLRA VALIAGDNNV RGCLQFVQDI SGTTHVTGKI SGLSPGFHGF HIHSFGDTTN GCISTGPHFN PLNRVHGPPN EEERHAGDLG NILAGSNGVA
101: EILIKDKHIP LSGQYSILGR AVVVHADPDD LGKGGHKLSK STGNAGSRVG CGIIGLQSSA DAKL

Arabidopsis Description

CSD3Superoxide dismutase [Cu-Zn] 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FK60]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.