Factsheet for Os03t0219200-01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 1
plastid 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	plastid
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
YLoc:	plastid

extracellular: 23159799

msms PMID: 23159799 doi

SG Kim, Y Wang, KH Lee, ZY Park, J Park, J Wu, SJ Kwon, YH Lee, GK Agrawal, R Rakwal, ST Kim, KY Kang

Plant Molecular Biology and Biotechnology Research Center, Gyeongsang National University, Jinju, 660-701, South Korea.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os04t0573200-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G18100.1	Os04t0573200-01	AT1G12520.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G242800.2	Wheat	cytosol	86.42	85.37
EER95258	Sorghum	cytosol	85.8	85.28
GSMUA_Achr4P06850_001	Banana	cytoskeleton, cytosol, plastid	76.54	77.5
TraesCS4B01G243200.2	Wheat	cytosol	82.1	76.44
VIT_08s0007g07280.t01	Wine grape	cytosol, mitochondrion	70.99	73.72
HORVU4Hr1G067390.2	Barley	cytosol	83.33	73.37
Solyc03g062890.2.1	Tomato	cytosol	69.75	72.44
PGSC0003DMT400059417	Potato	cytosol	70.99	69.7
CDY25459	Canola	cytosol	69.14	68.71
KRH08504	Soybean	cytosol	69.14	67.07
Bra002133.1-P	Field mustard	cytosol	66.05	66.05
TraesCS4A01G065800.2	Wheat	unclear	85.8	65.57
CDY38486	Canola	cytosol	65.43	65.43
AT5G18100.1	Thale cress	peroxisome	64.2	63.41
Os03t0351500-01	Rice	extracellular	57.41	61.18
Zm00001d028232_P012	Maize	cytosol	57.41	49.47
Os08t0561700-01	Rice	extracellular	55.56	42.65

Protein Annotations

MapMan:10.2.2.3	Gene3D:2.60.40.200	ProteinID:BAF11313.1	ProteinID:BAS82998.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0004784	GO:GO:0005488	GO:GO:0005507	GO:GO:0005575	GO:GO:0005576	GO:GO:0005615
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0005777	GO:GO:0006801
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009628	GO:GO:0009987
GO:GO:0016491	GO:GO:0019430	GO:GO:0046872	GO:GO:0055114	GO:GO:0071457	GO:GO:0071472
GO:GO:0071484	GO:GO:0071486	GO:GO:0071493	InterPro:IPR036423	EnsemblPlantsGene:Os03g0219200	EnsemblPlants:Os03t0219200-01
PFAM:PF00080	PRINTS:PR00068	ScanProsite:PS00332	PANTHER:PTHR10003	PANTHER:PTHR10003:SF31	UniProt:Q0DTX5
InterPro:SOD-like_Cu/Zn_dom_sf	InterPro:SOD_Cu/Zn_/chaperone	InterPro:SOD_Cu/Zn_BS	InterPro:SOD_Cu_Zn_dom	SUPFAM:SSF49329	UniParc:UPI0000E11FA4
SEG:seg	:	:	:	:	:

Description

SUPEROXIDE DISMUTASE 2Similar to Superoxide dismutase (EC 1.15.1.1). (Os03t0219200-01)

Coordinates

chr3:-:6271959..6275334

Molecular Weight (calculated)

16316.1 Da

IEP (calculated)

7.408

GRAVY (calculated)

-0.167

Length

162 amino acids

Sequence
(BLAST)

001: GKAGGLKGVA LIGGAGGNSA VAGALHFFQD PSTGYTEVRG RVTGLAPGLH GFHIHSFGDT TNGCNSTGPH FNPHNKSHGA PSDDERHVGD LGNIVANKDG
101: VADIFIKDLQ ISLSGPHSIL GRAVVVHADS DDLGRGGHEL SKTTGNAGAR IGCGIIGLRS AV

Best Arabidopsis Sequence Match ( AT5G18100.1 )
(BLAST)

001: MEAPRGNLRA VALIAGDNNV RGCLQFVQDI SGTTHVTGKI SGLSPGFHGF HIHSFGDTTN GCISTGPHFN PLNRVHGPPN EEERHAGDLG NILAGSNGVA
101: EILIKDKHIP LSGQYSILGR AVVVHADPDD LGKGGHKLSK STGNAGSRVG CGIIGLQSSA DAKL

Arabidopsis Description

CSD3Superoxide dismutase [Cu-Zn] 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FK60]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.