Factsheet for HORVU4Hr1G067390.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU2Hr1G094650.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G18100.1	HORVU2Hr1G094650.1	AT1G12520.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G243200.2	Wheat	cytosol	88.04	93.1
TraesCS4D01G242800.2	Wheat	cytosol	80.98	90.85
Os03t0219200-01	Rice	extracellular	73.37	83.33
EER95258	Sorghum	cytosol	66.85	75.46
GSMUA_Achr4P06850_001	Banana	cytoskeleton, cytosol, plastid	64.13	73.75
TraesCS4A01G065800.2	Wheat	unclear	81.52	70.75
VIT_08s0007g07280.t01	Wine grape	cytosol, mitochondrion	58.15	68.59
Solyc03g062890.2.1	Tomato	cytosol	57.61	67.95
PGSC0003DMT400059417	Potato	cytosol	59.24	66.06
CDY25459	Canola	cytosol	58.15	65.64
Bra002133.1-P	Field mustard	cytosol	56.52	64.2
AT5G18100.1	Thale cress	peroxisome	57.07	64.02
CDY38486	Canola	cytosol	55.98	63.58
KRH08504	Soybean	cytosol	57.07	62.87
HORVU5Hr1G066230.1	Barley	cytosol	41.3	52.78
HORVU5Hr1G066930.1	Barley	cytosol	40.22	51.39
Zm00001d028232_P012	Maize	cytosol	47.83	46.81
HORVU2Hr1G021110.3	Barley	plastid	30.43	35.0
HORVU7Hr1G060130.2	Barley	plastid, vacuole	47.28	33.98

Protein Annotations

MapMan:10.2.2.3	Gene3D:2.60.40.200	EMBL:AK357768	UniProt:F2D1L1	GO:GO:0003674	GO:GO:0003824
GO:GO:0004784	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005773	GO:GO:0005777	GO:GO:0006801	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009628	GO:GO:0009987	GO:GO:0016491	GO:GO:0019430	GO:GO:0046872	GO:GO:0055114
GO:GO:0071457	GO:GO:0071472	GO:GO:0071484	GO:GO:0071486	GO:GO:0071493	EnsemblPlantsGene:HORVU4Hr1G067390
EnsemblPlants:HORVU4Hr1G067390.2	InterPro:IPR036423	PFAM:PF00080	PRINTS:PR00068	ScanProsite:PS00087	PANTHER:PTHR10003
PANTHER:PTHR10003:SF31	InterPro:SOD-like_Cu/Zn_dom_sf	InterPro:SOD_Cu/Zn_/chaperone	InterPro:SOD_Cu/Zn_BS	InterPro:SOD_Cu_Zn_dom	SUPFAM:SSF49329
UniParc:UPI000200516E	SEG:seg	:	:	:	:

Description

Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2D1L1]

Coordinates

chrchr4H:-:559113701..559117287

Molecular Weight (calculated)

19036.5 Da

IEP (calculated)

7.418

GRAVY (calculated)

-0.107

Length

184 amino acids

Sequence
(BLAST)

001: MAGKPSSLKG VALISGGGAD SAVAGALHFV QDPSSGYTEV RGRVSGLAPG LHGFHIHAFG DTTNGCNSTG PHFNPLNKSH GAPVDDERHV GDLGNIQANK
101: DGVAEIFIKD LQISLRGPHS ILGRAVVVHA DSDDLGKGGH ELSKSTGNAG ARIGCGKLQP FILFSTLSEC THKVLLFVHY SLTP

Best Arabidopsis Sequence Match ( AT5G18100.1 )
(BLAST)

001: MEAPRGNLRA VALIAGDNNV RGCLQFVQDI SGTTHVTGKI SGLSPGFHGF HIHSFGDTTN GCISTGPHFN PLNRVHGPPN EEERHAGDLG NILAGSNGVA
101: EILIKDKHIP LSGQYSILGR AVVVHADPDD LGKGGHKLSK STGNAGSRVG CGIIGLQSSA DAKL

Arabidopsis Description

CSD3Superoxide dismutase [Cu-Zn] 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FK60]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.