Subcellular Localization
min:
: max
Winner_takes_all: peroxisome
Predictor Summary:
Predictor Summary:
- nucleus 2
- peroxisome 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra002133.1-P | Field mustard | cytosol | 85.98 | 87.04 |
| CDY38486 | Canola | cytosol | 85.37 | 86.42 |
| CDY25459 | Canola | cytosol | 85.37 | 85.89 |
| Solyc03g062890.2.1 | Tomato | cytosol | 67.68 | 71.15 |
| GSMUA_Achr4P06850_001 | Banana | cytoskeleton, cytosol, plastid | 68.9 | 70.62 |
| VIT_08s0007g07280.t01 | Wine grape | cytosol, mitochondrion | 65.85 | 69.23 |
| KRH08504 | Soybean | cytosol | 68.9 | 67.66 |
| PGSC0003DMT400059417 | Potato | cytosol | 67.07 | 66.67 |
| EER95258 | Sorghum | cytosol | 65.24 | 65.64 |
| TraesCS4D01G242800.2 | Wheat | cytosol | 64.63 | 64.63 |
| Os03t0219200-01 | Rice | extracellular | 63.41 | 64.2 |
| TraesCS4B01G243200.2 | Wheat | cytosol | 62.8 | 59.2 |
| AT1G08830.1 | Thale cress | cytosol | 53.66 | 57.89 |
| HORVU4Hr1G067390.2 | Barley | cytosol | 64.02 | 57.07 |
| TraesCS4A01G065800.2 | Wheat | unclear | 64.02 | 49.53 |
| Zm00001d028232_P012 | Maize | cytosol | 46.34 | 40.43 |
| AT2G28190.1 | Thale cress | plastid | 53.05 | 40.28 |
Protein Annotations
| MapMan:10.2.2.3 | Gene3D:2.60.40.200 | EntrezGene:831928 | ProteinID:AED92506.1 | ProteinID:AED92507.1 | EMBL:AF061520 |
| EMBL:AK117742 | ArrayExpress:AT5G18100 | EnsemblPlantsGene:AT5G18100 | RefSeq:AT5G18100 | TAIR:AT5G18100 | RefSeq:AT5G18100-TAIR-G |
| EnsemblPlants:AT5G18100.1 | TAIR:AT5G18100.1 | Unigene:At.49035 | ProteinID:BAB09468.1 | EMBL:BT003689 | Symbol:CSD3 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004784 | GO:GO:0005488 | GO:GO:0005507 | GO:GO:0005575 |
| GO:GO:0005576 | GO:GO:0005615 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005773 |
| GO:GO:0005777 | GO:GO:0006801 | GO:GO:0006950 | GO:GO:0006979 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008270 | GO:GO:0009628 | GO:GO:0009987 | GO:GO:0016209 | GO:GO:0016491 | GO:GO:0019430 |
| GO:GO:0046872 | GO:GO:0055114 | GO:GO:0071457 | GO:GO:0071472 | GO:GO:0071484 | GO:GO:0071486 |
| GO:GO:0071493 | GO:GO:0098869 | InterPro:IPR036423 | RefSeq:NP_001119245.1 | RefSeq:NP_197311.1 | PFAM:PF00080 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PRINTS:PR00068 |
| ScanProsite:PS00332 | PANTHER:PTHR10003 | PANTHER:PTHR10003:SF31 | UniProt:Q9FK60 | InterPro:SOD-like_Cu/Zn_dom_sf | InterPro:SOD_Cu/Zn_/chaperone |
| InterPro:SOD_Cu/Zn_BS | InterPro:SOD_Cu_Zn_dom | SUPFAM:SSF49329 | UniParc:UPI000000C105 | : | : |
Description
CSD3Superoxide dismutase [Cu-Zn] 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FK60]
Coordinates
chr5:+:5987187..5988885
Molecular Weight (calculated)
16942.1 Da
IEP (calculated)
7.727
GRAVY (calculated)
-0.210
Length
164 amino acids
Sequence
(BLAST)
(BLAST)
001: MEAPRGNLRA VALIAGDNNV RGCLQFVQDI SGTTHVTGKI SGLSPGFHGF HIHSFGDTTN GCISTGPHFN PLNRVHGPPN EEERHAGDLG NILAGSNGVA
101: EILIKDKHIP LSGQYSILGR AVVVHADPDD LGKGGHKLSK STGNAGSRVG CGIIGLQSSA DAKL
101: EILIKDKHIP LSGQYSILGR AVVVHADPDD LGKGGHKLSK STGNAGSRVG CGIIGLQSSA DAKL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.