Factsheet for Bra002133.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 2
mitochondrion 2
cytosol 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra016768.1-P
Bra026968.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G18100.1	Bra016768.1-P	AT1G12520.1	21798944
AT5G18100.1	Bra026968.1-P	AT1G12520.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY38486	Canola	cytosol	99.38	99.38
AT5G18100.1	Thale cress	peroxisome	87.04	85.98
GSMUA_Achr4P06850_001	Banana	cytoskeleton, cytosol, plastid	72.22	73.12
Solyc03g062890.2.1	Tomato	cytosol	68.52	71.15
VIT_08s0007g07280.t01	Wine grape	cytosol, mitochondrion	67.28	69.87
PGSC0003DMT400059417	Potato	cytosol	69.14	67.88
KRH08504	Soybean	cytosol	69.75	67.66
Os03t0219200-01	Rice	extracellular	66.05	66.05
EER95258	Sorghum	cytosol	66.05	65.64
TraesCS4D01G242800.2	Wheat	cytosol	66.05	65.24
TraesCS4B01G243200.2	Wheat	cytosol	62.35	58.05
Bra031642.1-P	Field mustard	cytosol	54.32	57.89
HORVU4Hr1G067390.2	Barley	cytosol	64.2	56.52
TraesCS4A01G065800.2	Wheat	unclear	62.96	48.11
Zm00001d028232_P012	Maize	cytosol	49.38	42.55
Bra034394.1-P	Field mustard	plastid	53.09	41.55
Bra011971.1-P	Field mustard	plastid	39.51	31.53

Protein Annotations

MapMan:10.2.2.3	Gene3D:2.60.40.200	EnsemblPlantsGene:Bra002133	EnsemblPlants:Bra002133.1	EnsemblPlants:Bra002133.1-P	GO:GO:0003674
GO:GO:0003824	GO:GO:0004784	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005773	GO:GO:0005777	GO:GO:0006801	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0009628	GO:GO:0009987	GO:GO:0016491	GO:GO:0019430	GO:GO:0046872
GO:GO:0055114	GO:GO:0071457	GO:GO:0071472	GO:GO:0071484	GO:GO:0071486	GO:GO:0071493
InterPro:IPR036423	UniProt:M4CD52	PFAM:PF00080	PRINTS:PR00068	ScanProsite:PS00332	PANTHER:PTHR10003
PANTHER:PTHR10003:SF31	InterPro:SOD-like_Cu/Zn_dom_sf	InterPro:SOD_Cu/Zn_/chaperone	InterPro:SOD_Cu/Zn_BS	InterPro:SOD_Cu_Zn_dom	SUPFAM:SSF49329
UniParc:UPI000254395D	:	:	:	:	:

Description

AT5G18100 (E=2e-081) CSD3 | CSD3 (copper/zinc superoxide dismutase 3); superoxide dismutase

Coordinates

chrA10:-:11320305..11321790

Molecular Weight (calculated)

16682.6 Da

IEP (calculated)

7.303

GRAVY (calculated)

-0.301

Length

162 amino acids

Sequence
(BLAST)

001: MGGPNLRAVA LIAGDKNIRG CLQFTQDTSG TTHVTGKISG LSPGFHGFHI HSFGDTTNGC NSTGPHFNPL NRVHGPPDEE ERHAGDLGNI FAGSDGVAEI
101: SIKDKQIPLS GQYSILGRAV VVHGDPDDLG RGGHKLSKST GNAGARVGCG IIGLQAAVDP KL

Best Arabidopsis Sequence Match ( AT5G18100.1 )
(BLAST)

001: MEAPRGNLRA VALIAGDNNV RGCLQFVQDI SGTTHVTGKI SGLSPGFHGF HIHSFGDTTN GCISTGPHFN PLNRVHGPPN EEERHAGDLG NILAGSNGVA
101: EILIKDKHIP LSGQYSILGR AVVVHADPDD LGKGGHKLSK STGNAGSRVG CGIIGLQSSA DAKL

Arabidopsis Description

CSD3Superoxide dismutase [Cu-Zn] 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FK60]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.