Factsheet for Bra011971.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX77163	Canola	plastid	57.64	57.64
Bra034394.1-P	Field mustard	plastid	57.64	56.52
AT2G28190.1	Thale cress	plastid	57.64	54.17
KRH26536	Soybean	plastid	46.8	51.91
GSMUA_Achr10P...	Banana	plastid	54.19	50.93
TraesCS7A01G292100.1	Wheat	plastid	50.25	50.75
Os08t0561700-01	Rice	extracellular	52.71	50.71
TraesCS7D01G290700.2	Wheat	plastid	50.25	50.49
TraesCS7B01G197300.1	Wheat	golgi	49.75	50.25
VIT_06s0061g00750.t01	Wine grape	extracellular, plastid	52.22	50.0
EES15166	Sorghum	plastid	50.74	50.0
PGSC0003DMT400001102	Potato	plastid	52.71	49.77
Zm00001d031908_P001	Maize	plastid	50.25	49.51
Solyc11g066390.1.1	Tomato	extracellular, plastid	52.71	49.31
Bra031642.1-P	Field mustard	cytosol	35.96	48.03
GSMUA_Achr9P20410_001	Banana	plastid	51.23	45.41
HORVU7Hr1G060130.2	Barley	plastid, vacuole	50.74	40.23
Bra002133.1-P	Field mustard	cytosol	31.53	39.51

Protein Annotations

MapMan:10.2.2.3	Gene3D:2.60.40.200	EnsemblPlantsGene:Bra011971	EnsemblPlants:Bra011971.1	EnsemblPlants:Bra011971.1-P	GO:GO:0003674
GO:GO:0003824	GO:GO:0004784	GO:GO:0005488	GO:GO:0006801	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0019430	GO:GO:0046872	GO:GO:0055114	InterPro:IPR036423
UniProt:M4D663	PFAM:PF00080	PRINTS:PR00068	ScanProsite:PS00087	PANTHER:PTHR10003	PANTHER:PTHR10003:SF34
InterPro:SOD-like_Cu/Zn_dom_sf	InterPro:SOD_Cu/Zn_/chaperone	InterPro:SOD_Cu/Zn_BS	InterPro:SOD_Cu_Zn_dom	SUPFAM:SSF49329	UniParc:UPI00025419A9
SEG:seg	:	:	:	:	:

Description

AT2G28190 (E=3e-052) CSD2, CZSOD2 | CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2); superoxide dismutase

Coordinates

chrA07:+:10848804..10850058

Molecular Weight (calculated)

21667.6 Da

IEP (calculated)

8.545

GRAVY (calculated)

-0.074

Length

203 amino acids

Sequence
(BLAST)

001: MATHTILSFS SPCHRLIISP SSNAIPPLRS SFRGVSLNLH RPHSVSFSAS SKKSQTVVSA AKKAVAVLKG NSDVEGVVTL TQEDTGPTTV NVRITGLTPG
101: PHGFHLHEFG DTTNGCISTG PHFNPNNMTH GAPQDEIRHA GDLGNIIANA DGGHELSLTT GNAGGRLACG NDLSFSIPLR LFQAFTFVLE HFFIRKVFSF
201: SFY

Best Arabidopsis Sequence Match ( AT2G28190.1 )
(BLAST)

001: MAATNTILAF SSPSRLLIPP SSNPSTLRSS FRGVSLNNNN LHRLQSVSFA VKAPSKALTV VSAAKKAVAV LKGTSDVEGV VTLTQDDSGP TTVNVRITGL
101: TPGPHGFHLH EFGDTTNGCI STGPHFNPNN MTHGAPEDEC RHAGDLGNIN ANADGVAETT IVDNQIPLTG PNSVVGRAFV VHELKDDLGK GGHELSLTTG
201: NAGGRLACGV IGLTPL

Arabidopsis Description

CSD2Superoxide dismutase [Cu-Zn] 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O78310]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.