Factsheet for HORVU7Hr1G060130.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid, vacuole

Predictor Summary:

plastid 2
mitochondrion 2
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 2
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid, vacuole
Any Predictor:	cytosol, mitochondrion, plastid, secretory
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
Predotar:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G292100.1	Wheat	plastid	75.0	95.52
TraesCS7D01G290700.2	Wheat	plastid	75.0	95.05
TraesCS7B01G197300.1	Wheat	golgi	74.61	95.02
EES15166	Sorghum	plastid	64.84	80.58
Zm00001d031908_P001	Maize	plastid	63.67	79.13
Os08t0561700-01	Rice	extracellular	62.89	76.3
KRH26536	Soybean	plastid	49.61	69.4
Bra034394.1-P	Field mustard	plastid	54.69	67.63
VIT_06s0061g00750.t01	Wine grape	extracellular, plastid	55.86	67.45
CDY30502	Canola	plastid	54.69	67.31
AT2G28190.1	Thale cress	plastid	56.64	67.13
CDX77163	Canola	plastid	52.73	66.5
GSMUA_Achr10P...	Banana	plastid	55.86	66.2
PGSC0003DMT400001102	Potato	plastid	55.08	65.58
Solyc11g066390.1.1	Tomato	extracellular, plastid	55.47	65.44
GSMUA_Achr9P20410_001	Banana	plastid	53.52	59.83
HORVU5Hr1G066230.1	Barley	cytosol	31.25	55.56
HORVU5Hr1G066930.1	Barley	cytosol	30.47	54.17
Bra011971.1-P	Field mustard	plastid	40.23	50.74
HORVU4Hr1G067390.2	Barley	cytosol	33.98	47.28
HORVU2Hr1G021110.3	Barley	plastid	27.34	43.75

Protein Annotations

MapMan:10.2.2.3	Gene3D:2.60.40.200	UniProt:A0A287WNG9	GO:GO:0003674	GO:GO:0003824	GO:GO:0004784
GO:GO:0005488	GO:GO:0005575	GO:GO:0005576	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006412	GO:GO:0006801	GO:GO:0006950	GO:GO:0006979	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009579	GO:GO:0009628
GO:GO:0009987	GO:GO:0010039	GO:GO:0016491	GO:GO:0019430	GO:GO:0019538	GO:GO:0034599
GO:GO:0035195	GO:GO:0040029	GO:GO:0046688	GO:GO:0046872	GO:GO:0048046	GO:GO:0055114
GO:GO:0071329	GO:GO:0071457	GO:GO:0071472	GO:GO:0071484	GO:GO:0071493	EnsemblPlantsGene:HORVU7Hr1G060130
EnsemblPlants:HORVU7Hr1G060130.2	InterPro:IPR036423	PFAM:PF00080	PRINTS:PR00068	ScanProsite:PS00087	ScanProsite:PS00332
PANTHER:PTHR10003	PANTHER:PTHR10003:SF34	InterPro:SOD-like_Cu/Zn_dom_sf	InterPro:SOD_Cu/Zn_/chaperone	InterPro:SOD_Cu/Zn_BS	InterPro:SOD_Cu_Zn_dom
SUPFAM:SSF49329	UniParc:UPI000B461627	SEG:seg	:	:	:

Description

Superoxide dismutase [Cu-Zn] [Source:UniProtKB/TrEMBL;Acc:A0A287WNG9]

Coordinates

chrchr7H:-:273940065..273953143

Molecular Weight (calculated)

26314.6 Da

IEP (calculated)

6.792

GRAVY (calculated)

0.089

Length

256 amino acids

Sequence
(BLAST)

001: MSYKDAYSQQ LAILLTMLLG PLRVRQSVPI KPRGPPYRQS PPPPTQKVLP LPTTAMAAQS LLFAAAAPLF QAPASACPFH SLRIVSAPAG AAAAVRALVV
101: ADATKKAVAV LKGTSQVEGV VTLTQDDDGP TTVNVRITGL TPGLHGFHLH EFGDTTNGCI STGPHFNPNG LTHGAPEDEV RHAGDLGNIV ANAEGVAETT
201: IVDSQIPLTG PNAVVGRAFV VHELEDDLGK GGHELSLSTG NAGGRLACGV VGLTPL

Best Arabidopsis Sequence Match ( AT2G28190.1 )
(BLAST)

001: MAATNTILAF SSPSRLLIPP SSNPSTLRSS FRGVSLNNNN LHRLQSVSFA VKAPSKALTV VSAAKKAVAV LKGTSDVEGV VTLTQDDSGP TTVNVRITGL
101: TPGPHGFHLH EFGDTTNGCI STGPHFNPNN MTHGAPEDEC RHAGDLGNIN ANADGVAETT IVDNQIPLTG PNSVVGRAFV VHELKDDLGK GGHELSLTTG
201: NAGGRLACGV IGLTPL

Arabidopsis Description

CSD2Superoxide dismutase [Cu-Zn] 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O78310]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.