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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • extracellular 4
  • endoplasmic reticulum 4
  • vacuole 4
  • plasma membrane 4
  • golgi 4
  • plastid 7
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:plastid, secretory
BaCelLo:secretory
ChloroP:plastid
EpiLoc:plastid
iPSORT:secretory
MultiLoc:plastid
Plant-mPloc:plastid
Predotar:plastid
PProwler:secretory
TargetP:secretory
WoLF PSORT:plastid
YLoc:plastid
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d031908_P001 Maize plastid 94.66 94.66
Os08t0561700-01 Rice extracellular 84.95 82.94
TraesCS7A01G292100.1 Wheat plastid 79.13 81.09
TraesCS7D01G290700.2 Wheat plastid 78.64 80.2
TraesCS7B01G197300.1 Wheat golgi 78.16 80.1
KRH26536 Soybean plastid 63.11 71.04
AT2G28190.1 Thale cress plastid 70.39 67.13
GSMUA_Achr10P... Banana plastid 69.9 66.67
Bra034394.1-P Field mustard plastid 66.99 66.67
CDY30502 Canola plastid 66.99 66.35
VIT_06s0061g00750.t01 Wine grape extracellular, plastid 67.48 65.57
CDX77163 Canola plastid 64.56 65.52
HORVU7Hr1G060130.2 Barley plastid, vacuole 80.58 64.84
PGSC0003DMT400001102 Potato plastid 66.99 64.19
OQU92597 Sorghum cytosol 47.09 63.82
Solyc11g066390.1.1 Tomato extracellular, plastid 66.99 63.59
GSMUA_Achr9P20410_001 Banana plastid 68.93 62.01
KXG36882 Sorghum cytosol 46.12 57.23
EER95258 Sorghum cytosol 43.2 54.6
Bra011971.1-P Field mustard plastid 50.0 50.74
Protein Annotations
MapMan:10.2.2.3Gene3D:2.60.40.200EntrezGene:8057804UniProt:C5YN49EnsemblPlants:EES15166ProteinID:EES15166
ProteinID:EES15166.1GO:GO:0003674GO:GO:0003824GO:GO:0004784GO:GO:0005488GO:GO:0005507
GO:GO:0005575GO:GO:0005576GO:GO:0005615GO:GO:0005622GO:GO:0005623GO:GO:0005737
GO:GO:0006412GO:GO:0006801GO:GO:0006950GO:GO:0006979GO:GO:0008150GO:GO:0008152
GO:GO:0008270GO:GO:0009058GO:GO:0009507GO:GO:0009536GO:GO:0009570GO:GO:0009579
GO:GO:0009628GO:GO:0009987GO:GO:0010039GO:GO:0016491GO:GO:0019430GO:GO:0019538
GO:GO:0034599GO:GO:0035195GO:GO:0040029GO:GO:0046688GO:GO:0046872GO:GO:0048046
GO:GO:0055114GO:GO:0071329GO:GO:0071457GO:GO:0071472GO:GO:0071484GO:GO:0071493
InterPro:IPR036423PFAM:PF00080PRINTS:PR00068ScanProsite:PS00087ScanProsite:PS00332PANTHER:PTHR10003
PANTHER:PTHR10003:SF34MetaCyc:PWY-6854InterPro:SOD-like_Cu/Zn_dom_sfInterPro:SOD_Cu/Zn_/chaperoneInterPro:SOD_Cu/Zn_BSInterPro:SOD_Cu_Zn_dom
EnsemblPlantsGene:SORBI_3007G166600SUPFAM:SSF49329unigene:Sbi.6841SignalP:SignalP-noTMUniParc:UPI0001A87D68RefSeq:XP_002445671.1
SEG:seg:::::
Description
hypothetical protein
Coordinates
chr7:-:60165035..60167803
Molecular Weight (calculated)
20704.3 Da
IEP (calculated)
5.418
GRAVY (calculated)
0.125
Length
206 amino acids
Sequence
(BLAST)
001: MAAQSFLLAA TATATTAALF AAPYSSARPF HSAHFVAGPG GAAAARALVV ADASKKAVAV LKGTSEVEGV VTLTQDDDGP TTVNVRITGL TPGLHGFHLH
101: EFGDTTNGCI STGPHFNPNN LTHGAPEDEV RHAGDLGNIV ANAEGVAEAT IVDTQIPLSG PNSVVGRAFV VHELEDDLGK GGHELSLSTG NAGGRLACGV
201: VGLTPL
Best Arabidopsis Sequence Match ( AT2G28190.1 )
(BLAST)
001: MAATNTILAF SSPSRLLIPP SSNPSTLRSS FRGVSLNNNN LHRLQSVSFA VKAPSKALTV VSAAKKAVAV LKGTSDVEGV VTLTQDDSGP TTVNVRITGL
101: TPGPHGFHLH EFGDTTNGCI STGPHFNPNN MTHGAPEDEC RHAGDLGNIN ANADGVAETT IVDNQIPLTG PNSVVGRAFV VHELKDDLGK GGHELSLTTG
201: NAGGRLACGV IGLTPL
Arabidopsis Description
CSD2Superoxide dismutase [Cu-Zn] 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O78310]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.