Factsheet for PGSC0003DMT400001102

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g066390.1.1	Tomato	extracellular, plastid	88.84	88.02
KRH25109	Soybean	plastid	67.91	71.57
GSMUA_Achr10P...	Banana	plastid	69.77	69.44
TraesCS7D01G290700.2	Wheat	plastid	64.65	68.81
TraesCS7B01G197300.1	Wheat	golgi	64.19	68.66
TraesCS7A01G292100.1	Wheat	plastid	64.19	68.66
Bra034394.1-P	Field mustard	plastid	65.58	68.12
KRH30559	Soybean	plastid	66.05	67.94
CDY30502	Canola	plastid	65.58	67.79
Zm00001d031908_P001	Maize	plastid	64.65	67.48
AT2G28190.1	Thale cress	plastid	67.44	67.13
CDX77163	Canola	plastid	63.26	67.0
EES15166	Sorghum	plastid	64.19	66.99
VIT_06s0061g00750.t01	Wine grape	extracellular, plastid	66.05	66.98
Os08t0561700-01	Rice	extracellular	65.12	66.35
PGSC0003DMT400027651	Potato	cytosol	44.19	62.5
GSMUA_Achr9P20410_001	Banana	plastid	62.79	58.95
PGSC0003DMT400059417	Potato	cytosol	42.33	55.15
HORVU7Hr1G060130.2	Barley	plastid, vacuole	65.58	55.08
Bra011971.1-P	Field mustard	plastid	49.77	52.71

Protein Annotations

MapMan:10.2.2.3	EntrezGene:102605869	Gene3D:2.60.40.200	GO:GO:0003674	GO:GO:0003824	GO:GO:0004784
GO:GO:0005488	GO:GO:0006801	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016491	GO:GO:0019430	GO:GO:0046872	GO:GO:0055114	InterPro:IPR036423	UniProt:M0ZHX4
PFAM:PF00080	EnsemblPlantsGene:PGSC0003DMG400000417	PGSC:PGSC0003DMG400000417	EnsemblPlants:PGSC0003DMT400001102	PRINTS:PR00068	ScanProsite:PS00087
ScanProsite:PS00332	PANTHER:PTHR10003	PANTHER:PTHR10003:SF34	InterPro:SOD-like_Cu/Zn_dom_sf	InterPro:SOD_Cu/Zn_/chaperone	InterPro:SOD_Cu/Zn_BS
InterPro:SOD_Cu_Zn_dom	SUPFAM:SSF49329	UniParc:UPI0002958B67	RefSeq:XP_006349038.1	SEG:seg	:

Description

Superoxide dismutase [Cu-Zn] [Source:PGSC_GENE;Acc:PGSC0003DMG400000417]

Coordinates

chr11:+:39217263..39223656

Molecular Weight (calculated)

22120.1 Da

IEP (calculated)

6.859

GRAVY (calculated)

-0.038

Length

215 amino acids

Sequence
(BLAST)

001: MAAHSIFTTT STTNSFLYPI SSSSPNINSS FHGVSLNVKS NFRQSLTLYA VNTPKPLTVF AATKKAVAVL KGNSNVEGVV TLSQDDGGPT TVNVRITGLA
101: PGLHGFHLHE YGDTTNGCMS TGAHFNPNKL THGAPGDEIR HAGDLGNIVA NADGVAEATL VDNQIPLTGP NSVVGRALVV HELQDDLGKG GHELSLTTGN
201: AGGRLACGVV GLTPI

Best Arabidopsis Sequence Match ( AT2G28190.1 )
(BLAST)

001: MAATNTILAF SSPSRLLIPP SSNPSTLRSS FRGVSLNNNN LHRLQSVSFA VKAPSKALTV VSAAKKAVAV LKGTSDVEGV VTLTQDDSGP TTVNVRITGL
101: TPGPHGFHLH EFGDTTNGCI STGPHFNPNN MTHGAPEDEC RHAGDLGNIN ANADGVAETT IVDNQIPLTG PNSVVGRAFV VHELKDDLGK GGHELSLTTG
201: NAGGRLACGV IGLTPL

Arabidopsis Description

CSD2Superoxide dismutase [Cu-Zn] 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O78310]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.