Factsheet for GSMUA_Achr9P20410_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid, secretory
BaCelLo:	secretory
EpiLoc:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Plant-mPloc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH25109	Soybean	plastid	63.32	71.08
Os08t0561700-01	Rice	extracellular	64.19	69.67
GSMUA_Achr10P...	Banana	plastid	65.5	69.44
Zm00001d031908_P001	Maize	plastid	62.01	68.93
EES15166	Sorghum	plastid	62.01	68.93
TraesCS7A01G292100.1	Wheat	plastid	60.26	68.66
TraesCS7D01G290700.2	Wheat	plastid	60.26	68.32
TraesCS7B01G197300.1	Wheat	golgi	59.83	68.16
KRH30559	Soybean	plastid	61.57	67.46
Solyc11g066390.1.1	Tomato	extracellular, plastid	62.45	65.9
AT2G28190.1	Thale cress	plastid	60.7	64.35
Bra034394.1-P	Field mustard	plastid	58.08	64.25
VIT_06s0061g00750.t01	Wine grape	extracellular, plastid	59.39	64.15
CDX77163	Canola	plastid	56.77	64.04
CDY30502	Canola	plastid	58.08	63.94
GSMUA_Achr2P02380_001	Banana	cytosol	41.92	63.16
PGSC0003DMT400001102	Potato	plastid	58.95	62.79
GSMUA_Achr7P03680_001	Banana	plasma membrane	41.48	62.5
HORVU7Hr1G060130.2	Barley	plastid, vacuole	59.83	53.52
GSMUA_Achr4P06850_001	Banana	cytoskeleton, cytosol, plastid	35.81	51.25
Bra011971.1-P	Field mustard	plastid	45.41	51.23
GSMUA_Achr8P09910_001	Banana	cytosol, peroxisome, plastid	28.38	43.92

Protein Annotations

MapMan:10.2.2.3	Gene3D:2.60.40.200	GO:GO:0003674	GO:GO:0003824	GO:GO:0004784	GO:GO:0005488
GO:GO:0006801	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491
GO:GO:0019430	GO:GO:0046872	GO:GO:0055114	EnsemblPlantsGene:GSMUA_Achr9G20410_001	EnsemblPlants:GSMUA_Achr9P20410_001	EnsemblPlants:GSMUA_Achr9T20410_001
InterPro:IPR036423	UniProt:M0U200	PFAM:PF00080	PRINTS:PR00068	ScanProsite:PS00087	ScanProsite:PS00332
PANTHER:PTHR10003	PANTHER:PTHR10003:SF34	InterPro:SOD-like_Cu/Zn_dom_sf	InterPro:SOD_Cu/Zn_/chaperone	InterPro:SOD_Cu/Zn_BS	InterPro:SOD_Cu_Zn_dom
SUPFAM:SSF49329	UniParc:UPI00029516BD	SEG:seg	:	:	:

Description

Superoxide dismutase [Cu-Zn], chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr9G20410_001]

Coordinates

chr9:-:24421599..24426482

Molecular Weight (calculated)

23481.2 Da

IEP (calculated)

7.070

GRAVY (calculated)

0.152

Length

229 amino acids

Sequence
(BLAST)

001: MQATLAAAMP ARTLLFSASS AALSHLAPPA SSARPLLRSA LLGQPFRCLP FSFPKVASSA SPAAARPLVV VAVIKKAVAV LKGNSDVEGV VTLVQEDNGP
101: TTVNVRVTGL TPGLHGFHLH EYGDTTNGCI STGAHFNPNK MTHGAPEDEV RHAGDLGNIV ANSEGRLLSI LHFVDSQIPL SGPNSVVGRA LVVHELEDDL
201: GKGGHELSLT TGNAGGRLAC GVVGLTPAE

Best Arabidopsis Sequence Match ( AT2G28190.1 )
(BLAST)

001: MAATNTILAF SSPSRLLIPP SSNPSTLRSS FRGVSLNNNN LHRLQSVSFA VKAPSKALTV VSAAKKAVAV LKGTSDVEGV VTLTQDDSGP TTVNVRITGL
101: TPGPHGFHLH EFGDTTNGCI STGPHFNPNN MTHGAPEDEC RHAGDLGNIN ANADGVAETT IVDNQIPLTG PNSVVGRAFV VHELKDDLGK GGHELSLTTG
201: NAGGRLACGV IGLTPL

Arabidopsis Description

CSD2Superoxide dismutase [Cu-Zn] 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O78310]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.