Factsheet for GSMUA_Achr10P06740_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid, secretory
BaCelLo:	plastid
EpiLoc:	plastid
iPSORT:	secretory
MultiLoc:	plastid
Plant-mPloc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G292100.1	Wheat	plastid	65.28	70.15
EES15166	Sorghum	plastid	66.67	69.9
TraesCS7D01G290700.2	Wheat	plastid	65.28	69.8
PGSC0003DMT400001102	Potato	plastid	69.44	69.77
Os08t0561700-01	Rice	extracellular	68.06	69.67
TraesCS7B01G197300.1	Wheat	golgi	64.81	69.65
Bra034394.1-P	Field mustard	plastid	66.2	69.08
CDX77163	Canola	plastid	64.81	68.97
Zm00001d031908_P001	Maize	plastid	65.74	68.93
CDY30502	Canola	plastid	66.2	68.75
KRH25109	Soybean	plastid	64.81	68.63
Solyc11g066390.1.1	Tomato	extracellular, plastid	67.59	67.28
AT2G28190.1	Thale cress	plastid	67.13	67.13
KRH30559	Soybean	plastid	64.35	66.51
VIT_06s0061g00750.t01	Wine grape	extracellular, plastid	64.81	66.04
GSMUA_Achr9P20410_001	Banana	plastid	69.44	65.5
GSMUA_Achr7P03680_001	Banana	plasma membrane	44.44	63.16
GSMUA_Achr2P02380_001	Banana	cytosol	43.98	62.5
HORVU7Hr1G060130.2	Barley	plastid, vacuole	66.2	55.86
Bra011971.1-P	Field mustard	plastid	50.93	54.19
GSMUA_Achr4P06850_001	Banana	cytoskeleton, cytosol, plastid	39.35	53.12
GSMUA_Achr8P09910_001	Banana	cytosol, peroxisome, plastid	29.17	42.57

Protein Annotations

MapMan:10.2.2.3	Gene3D:2.60.40.200	GO:GO:0003674	GO:GO:0003824	GO:GO:0004784	GO:GO:0005488
GO:GO:0006801	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491
GO:GO:0019430	GO:GO:0046872	GO:GO:0055114	EnsemblPlantsGene:GSMUA_Achr10G06740_001	EnsemblPlants:GSMUA_Achr10P06740_001	EnsemblPlants:GSMUA_Achr10T06740_001
InterPro:IPR036423	UniProt:M0RG01	PFAM:PF00080	PRINTS:PR00068	ScanProsite:PS00087	ScanProsite:PS00332
PANTHER:PTHR10003	PANTHER:PTHR10003:SF34	InterPro:SOD-like_Cu/Zn_dom_sf	InterPro:SOD_Cu/Zn_/chaperone	InterPro:SOD_Cu/Zn_BS	InterPro:SOD_Cu_Zn_dom
SUPFAM:SSF49329	UniParc:UPI0002968778	SEG:seg	:	:	:

Description

Superoxide dismutase [Cu-Zn], chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr10G06740_001]

Coordinates

chr10:-:17019796..17023993

Molecular Weight (calculated)

21977.2 Da

IEP (calculated)

7.369

GRAVY (calculated)

0.125

Length

216 amino acids

Sequence
(BLAST)

001: MAAHTVLLSA SSPAFVFPGF SSASPARPFH SAIVGQPLRP ASSTAKLVST AAKAKPLVVV AAAKKAVAVL KGNSSVEGVV TLVQEDNGPT TVKVRVTGLT
101: PGLHGFHLHE FGDTTNGCIS TGAHFNPNKM THGAPKDEIR HAGDLGNIVA NVDGVAEATI VDNQIPLYGP NSVVGRAFVV HELEDDLGKG GHELSLTTGN
201: AGGRLACGVV GLTPVE

Best Arabidopsis Sequence Match ( AT2G28190.1 )
(BLAST)

001: MAATNTILAF SSPSRLLIPP SSNPSTLRSS FRGVSLNNNN LHRLQSVSFA VKAPSKALTV VSAAKKAVAV LKGTSDVEGV VTLTQDDSGP TTVNVRITGL
101: TPGPHGFHLH EFGDTTNGCI STGPHFNPNN MTHGAPEDEC RHAGDLGNIN ANADGVAETT IVDNQIPLTG PNSVVGRAFV VHELKDDLGK GGHELSLTTG
201: NAGGRLACGV IGLTPL

Arabidopsis Description

CSD2Superoxide dismutase [Cu-Zn] 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O78310]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.