Factsheet for Solyc11g066390.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

plastid: 20363867
extracellular: 22364583
extracellular: 22892874
plastid: 22908117
extracellular: 29876421

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 22892874 doi

EH Konozy, H Rogniaux, M Causse, M Faurobert

Unité de Génétique et Amélioration des Fruits et Légumes, INRA, BP 94, 84143 Montfavet, France. ehkonozy@yahoo.com

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400001102	Potato	plastid	88.02	88.84
KRH25109	Soybean	plastid	68.2	72.55
TraesCS7D01G290700.2	Wheat	plastid	65.44	70.3
TraesCS7B01G197300.1	Wheat	golgi	64.98	70.15
TraesCS7A01G292100.1	Wheat	plastid	64.98	70.15
KRH30559	Soybean	plastid	66.36	68.9
Bra034394.1-P	Field mustard	plastid	64.98	68.12
CDY30502	Canola	plastid	64.98	67.79
GSMUA_Achr10P...	Banana	plastid	67.28	67.59
Zm00001d031908_P001	Maize	plastid	64.06	67.48
AT2G28190.1	Thale cress	plastid	66.82	67.13
CDX77163	Canola	plastid	62.67	67.0
EES15166	Sorghum	plastid	63.59	66.99
VIT_06s0061g00750.t01	Wine grape	extracellular, plastid	65.44	66.98
Os08t0561700-01	Rice	extracellular	64.06	65.88
Solyc01g067740.2.1	Tomato	extracellular	44.7	63.82
GSMUA_Achr9P20410_001	Banana	plastid	65.9	62.45
Solyc03g062890.2.1	Tomato	cytosol	41.47	57.69
HORVU7Hr1G060130.2	Barley	plastid, vacuole	65.44	55.47
Bra011971.1-P	Field mustard	plastid	49.31	52.71

Protein Annotations

MapMan:10.2.2.3	Gene3D:2.60.40.200	EMBL:AF527880	GO:GO:0003674	GO:GO:0003824	GO:GO:0004601
GO:GO:0004784	GO:GO:0005488	GO:GO:0005507	GO:GO:0005575	GO:GO:0005576	GO:GO:0005615
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006801	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016209
GO:GO:0016491	GO:GO:0019430	GO:GO:0046872	GO:GO:0055114	GO:GO:0098869	InterPro:IPR036423
PFAM:PF00080	PRINTS:PR00068	ScanProsite:PS00087	ScanProsite:PS00332	PANTHER:PTHR10003	PANTHER:PTHR10003:SF34
UniProt:Q7XAV2	InterPro:SOD-like_Cu/Zn_dom_sf	InterPro:SOD_Cu/Zn_/chaperone	InterPro:SOD_Cu/Zn_BS	InterPro:SOD_Cu_Zn_dom	SUPFAM:SSF49329
EnsemblPlantsGene:Solyc11g066390.1	EnsemblPlants:Solyc11g066390.1.1	UniParc:UPI00001B583D	SEG:seg	:	:

Description

Superoxide dismutase [Cu-Zn] 2, chloroplastic [Source:Projected from Arabidopsis thaliana (AT2G28190) UniProtKB/Swiss-Prot;Acc:O78310]

Coordinates

chr11:+:52162632..52167951

Molecular Weight (calculated)

22283.2 Da

IEP (calculated)

6.504

GRAVY (calculated)

-0.018

Length

217 amino acids

Sequence
(BLAST)

001: MAAHSIFTTT STTNSFLYPI SSSSSSPNIN SSFHGVSLNV KSKFGQSLTL YAVTTPKPLT VFAATKKAVA VLKGNSNVEG VVTLSQDDDG PTTVNVRITG
101: LAPGLHGFHL HEYGDTTNGC MSTGAHFNPN KLTHGAPGDE IRHAGDLGNI VANADGVAEV TLVDNQIPLT GPNSVVGRAL VVHELEDDLG KGGHELSLTT
201: GNAGGRLACG VVGLTPI

Best Arabidopsis Sequence Match ( AT2G28190.1 )
(BLAST)

001: MAATNTILAF SSPSRLLIPP SSNPSTLRSS FRGVSLNNNN LHRLQSVSFA VKAPSKALTV VSAAKKAVAV LKGTSDVEGV VTLTQDDSGP TTVNVRITGL
101: TPGPHGFHLH EFGDTTNGCI STGPHFNPNN MTHGAPEDEC RHAGDLGNIN ANADGVAETT IVDNQIPLTG PNSVVGRAFV VHELKDDLGK GGHELSLTTG
201: NAGGRLACGV IGLTPL

Arabidopsis Description

CSD2Superoxide dismutase [Cu-Zn] 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O78310]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.