Factsheet for TraesCS7B01G197300.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 7
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	plastid, secretory
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	secretory
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

golgi: 23128297
unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms, gfp PMID: 23128297 doi

M Suliman, AL Chateigner-Boutin, M Francin-Allami, A Partier, B Bouchet, J Salse, C Pont, J Marion, H Rogniaux, D Tessier, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G290700.2	Wheat	plastid	98.51	98.02
TraesCS7A01G292100.1	Wheat	plastid	98.01	98.01
EES15166	Sorghum	plastid	80.1	78.16
Zm00001d031908_P001	Maize	plastid	78.61	76.7
HORVU7Hr1G060130.2	Barley	plastid, vacuole	95.02	74.61
Os08t0561700-01	Rice	extracellular	77.61	73.93
KRH26536	Soybean	plastid	62.69	68.85
AT2G28190.1	Thale cress	plastid	70.65	65.74
Bra034394.1-P	Field mustard	plastid	67.66	65.7
VIT_06s0061g00750.t01	Wine grape	extracellular, plastid	69.15	65.57
CDX77163	Canola	plastid	66.17	65.52
CDY30502	Canola	plastid	67.66	65.38
Solyc11g066390.1.1	Tomato	extracellular, plastid	70.15	64.98
GSMUA_Achr10P...	Banana	plastid	69.65	64.81
PGSC0003DMT400001102	Potato	plastid	68.66	64.19
GSMUA_Achr9P20410_001	Banana	plastid	68.16	59.83
Bra011971.1-P	Field mustard	plastid	50.25	49.75
TraesCS4B01G243200.2	Wheat	cytosol	41.29	47.7

Protein Annotations

MapMan:10.2.2.3	Gene3D:2.60.40.200	GO:GO:0003674	GO:GO:0003824	GO:GO:0004784	GO:GO:0005488
GO:GO:0005575	GO:GO:0005576	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006412
GO:GO:0006801	GO:GO:0006950	GO:GO:0006979	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009579	GO:GO:0009628	GO:GO:0009987
GO:GO:0010039	GO:GO:0019538	GO:GO:0034599	GO:GO:0035195	GO:GO:0040029	GO:GO:0046688
GO:GO:0046872	GO:GO:0048046	GO:GO:0055114	GO:GO:0071329	GO:GO:0071457	GO:GO:0071472
GO:GO:0071484	GO:GO:0071493	InterPro:IPR036423	PFAM:PF00080	PRINTS:PR00068	ScanProsite:PS00087
ScanProsite:PS00332	PANTHER:PTHR10003	PANTHER:PTHR10003:SF34	InterPro:SOD-like_Cu/Zn_dom_sf	InterPro:SOD_Cu/Zn_/chaperone	InterPro:SOD_Cu/Zn_BS
InterPro:SOD_Cu_Zn_dom	SUPFAM:SSF49329	SignalP:SignalP-noTM	EnsemblPlantsGene:TraesCS7B01G197300	EnsemblPlants:TraesCS7B01G197300.1	TIGR:cd00305
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr7B:-:340624375..340657061

Molecular Weight (calculated)

20324.1 Da

IEP (calculated)

5.461

GRAVY (calculated)

0.156

Length

201 amino acids

Sequence
(BLAST)

001: MAAQSLLFAA AAPLFQVPAS ARPFQSLRIV STPGGATAAA RALVVADATK KAVAVLKGTS QVEGVVTLTQ EDDGPTTVNV RITGLAPGLH GFHLHEFGDM
101: TNGCISTGPH FNPNGLTHGA PEDEVRHAGD LGNIVANAEG VAETTIVDSQ IPLTGPNAVV GRAFVVHELE DDLGKGGHEL SLSTGNAGGR LACGVVGLTP
201: L

Best Arabidopsis Sequence Match ( AT2G28190.1 )
(BLAST)

001: MAATNTILAF SSPSRLLIPP SSNPSTLRSS FRGVSLNNNN LHRLQSVSFA VKAPSKALTV VSAAKKAVAV LKGTSDVEGV VTLTQDDSGP TTVNVRITGL
101: TPGPHGFHLH EFGDTTNGCI STGPHFNPNN MTHGAPEDEC RHAGDLGNIN ANADGVAETT IVDNQIPLTG PNSVVGRAFV VHELKDDLGK GGHELSLTTG
201: NAGGRLACGV IGLTPL

Arabidopsis Description

CSD2Superoxide dismutase [Cu-Zn] 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O78310]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.