Factsheet for Os08t0561700-01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
EpiLoc:	plastid
iPSORT:	secretory
MultiLoc:	plastid
Plant-mPloc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 15069638
plastid: 17189339
extracellular: 18986194
nucleus: 19321431
plastid: 21433289
extracellular: 23159799
extracellular: 25047395
extracellular: 26072143
plasma membrane: 27800704
extracellular: 28232208

msms PMID: 26072143 doi

B Du, Z Wei, Z Wang, X Wang, X Peng, B Du, R Chen, L Zhu, G He

State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan, 430072, China., State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan, 430072, China. Electronic address: gche@whu.edu.cn.

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 25047395 doi

JY Kim, J Wu, SJ Kwon, H Oh, SE Lee, SG Kim, Y Wang, GK Agrawal, R Rakwal, KY Kang, IP Ahn, BG Kim, ST Kim

Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang, South Korea.

msms PMID: 19321431 doi

MK Choudhary, D Basu, A Datta, N Chakraborty, S Chakraborty

National Institute of Plant Genome Research, New Delhi, India.

msms PMID: 15069638 doi

N Tanaka, M Fujita, H Handa, S Murayama, M Uemura, Y Kawamura, T Mitsui, S Mikami, Y Tozawa, T Yoshinaga, S Komatsu

Department of Molecular Genetics, National Institute of Agrobiological Sciences, 305-8602, Tsukuba, Japan.

msms PMID: 23159799 doi

SG Kim, Y Wang, KH Lee, ZY Park, J Park, J Wu, SJ Kwon, YH Lee, GK Agrawal, R Rakwal, ST Kim, KY Kang

Plant Molecular Biology and Biotechnology Research Center, Gyeongsang National University, Jinju, 660-701, South Korea.

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

msms PMID: 17189339 doi

T Kleffmann, A von Zychlinski, D Russenberger, M Hirsch-Hoffmann, P Gehrig, W Gruissem, S Baginsky

Institute of Plant Sciences, Eidgenössische Technische Hochschule Zurich, 8092 Zurich, Switzerland.

msms PMID: 28232208 doi

Y Wang, R Gupta, W Song, HH Huh, SE Lee, J Wu, GK Agrawal, R Rakwal, KY Kang, SR Park, ST Kim

Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea., Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea. Electronic address: stkim71@pusan.ac.kr., Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju, South Korea., National Academy of Agricultural Science, Rural Development Administration, Suwon 441-707, South Korea. Electronic address: srpark@korea.kr., Plant Proteomics Group, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal; Faculty of Health and Sport Sciences, Tsukuba International Academy for Sport Studies (TIAS), University of Tsukuba, 1-1-1 Tennodai, Tsukuba, 305-8574, Ibaraki, Japan.

msms PMID: 18986194 doi

YH Jung, SH Jeong, SH Kim, R Singh, JE Lee, YS Cho, GK Agrawal, R Rakwal, NS Jwa

Department of Molecular Biology, Sejong University, Gunja-dong, Seoul 143-747, South Korea.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d031908_P001	Maize	plastid	82.94	84.95
EES15166	Sorghum	plastid	82.94	84.95
TraesCS7A01G292100.1	Wheat	plastid	74.41	78.11
TraesCS7B01G197300.1	Wheat	golgi	73.93	77.61
TraesCS7D01G290700.2	Wheat	plastid	73.93	77.23
KRH26536	Soybean	plastid	62.09	71.58
GSMUA_Achr10P...	Banana	plastid	69.67	68.06
AT2G28190.1	Thale cress	plastid	69.19	67.59
Bra034394.1-P	Field mustard	plastid	65.4	66.67
VIT_06s0061g00750.t01	Wine grape	extracellular, plastid	66.82	66.51
CDY30502	Canola	plastid	65.4	66.35
CDX77163	Canola	plastid	63.03	65.52
PGSC0003DMT400001102	Potato	plastid	66.35	65.12
GSMUA_Achr9P20410_001	Banana	plastid	69.67	64.19
Solyc11g066390.1.1	Tomato	extracellular, plastid	65.88	64.06
HORVU7Hr1G060130.2	Barley	plastid, vacuole	76.3	62.89
Os03t0351500-01	Rice	extracellular	44.55	61.84
Os03t0219200-01	Rice	extracellular	42.65	55.56
Bra011971.1-P	Field mustard	plastid	50.71	52.71

Protein Annotations

MapMan:10.2.2.3	Gene3D:2.60.40.200	EntrezGene:4346329	EMBL:AK059841	EMBL:AK068627	EMBL:AK104013
ProteinID:BAB21760.1	ProteinID:BAD09607.1	ProteinID:BAD13222.1	ProteinID:BAF24428.1	ProteinID:BAT06708.1	EMBL:D85239
GO:GO:0003674	GO:GO:0003824	GO:GO:0004784	GO:GO:0005488	GO:GO:0005507	GO:GO:0005575
GO:GO:0005576	GO:GO:0005615	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006412
GO:GO:0006801	GO:GO:0006950	GO:GO:0006979	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270
GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009579	GO:GO:0009628
GO:GO:0009987	GO:GO:0010039	GO:GO:0016209	GO:GO:0016491	GO:GO:0019430	GO:GO:0019538
GO:GO:0034599	GO:GO:0035195	GO:GO:0040029	GO:GO:0046688	GO:GO:0046872	GO:GO:0048046
GO:GO:0055114	GO:GO:0071329	GO:GO:0071457	GO:GO:0071472	GO:GO:0071484	GO:GO:0071493
GO:GO:0098869	InterPro:IPR036423	EnsemblPlantsGene:Os08g0561700	EnsemblPlants:Os08t0561700-01	UniProt:P93407	PFAM:PF00080
PRINTS:PR00068	ScanProsite:PS00087	ScanProsite:PS00332	PANTHER:PTHR10003	PANTHER:PTHR10003:SF34	InterPro:SOD-like_Cu/Zn_dom_sf
InterPro:SOD_Cu/Zn_/chaperone	InterPro:SOD_Cu/Zn_BS	InterPro:SOD_Cu_Zn_dom	SUPFAM:SSF49329	UniParc:UPI0000001091	RefSeq:XP_015649518.1
SEG:seg	:	:	:	:	:

Description

SUPEROXIDE DISMUTASE 4Similar to Superoxide dismutase. (Os08t0561700-01)

Coordinates

chr8:+:28132469..28135505

Molecular Weight (calculated)

21302.2 Da

IEP (calculated)

6.220

GRAVY (calculated)

0.110

Length

211 amino acids

Sequence
(BLAST)

001: MQAILAAAMA AQTLLFSATA PPASLFQSPS SARPFHSLRL AAGPAGAAAA RALVVADATK KAVAVLKGTS QVEGVVTLTQ DDQGPTTVNV RVTGLTPGLH
101: GFHLHEFGDT TNGCISTGPH FNPNNLTHGA PEDEVRHAGD LGNIVANAEG VAEATIVDKQ IPLSGPNSVV GRAFVVHELE DDLGKGGHEL SLSTGNAGGR
201: LACGVVGLTP L

Best Arabidopsis Sequence Match ( AT2G28190.1 )
(BLAST)

001: MAATNTILAF SSPSRLLIPP SSNPSTLRSS FRGVSLNNNN LHRLQSVSFA VKAPSKALTV VSAAKKAVAV LKGTSDVEGV VTLTQDDSGP TTVNVRITGL
101: TPGPHGFHLH EFGDTTNGCI STGPHFNPNN MTHGAPEDEC RHAGDLGNIN ANADGVAETT IVDNQIPLTG PNSVVGRAFV VHELKDDLGK GGHELSLTTG
201: NAGGRLACGV IGLTPL

Arabidopsis Description

CSD2Superoxide dismutase [Cu-Zn] 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O78310]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.