CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra034394.1-P	Field mustard	plastid	99.52	100.0
CDX77163	Canola	plastid	93.75	96.06
AT2G28190.1	Thale cress	plastid	76.44	73.61
KRH26536	Soybean	plastid	61.06	69.4
TraesCS7D01G290700.2	Wheat	plastid	66.35	68.32
TraesCS7A01G292100.1	Wheat	plastid	65.87	68.16
TraesCS7B01G197300.1	Wheat	golgi	65.38	67.66
Zm00001d031908_P001	Maize	plastid	66.35	66.99
EES15166	Sorghum	plastid	66.35	66.99
GSMUA_Achr10P...	Banana	plastid	68.75	66.2
PGSC0003DMT400001102	Potato	plastid	67.79	65.58
Os08t0561700-01	Rice	extracellular	66.35	65.4
Solyc11g066390.1.1	Tomato	extracellular, plastid	67.79	64.98
VIT_06s0061g00750.t01	Wine grape	extracellular, plastid	65.87	64.62
CDY06331	Canola	cytosol	46.63	63.82
CDX95028	Canola	cytosol	45.19	61.84
CDX93533	Canola	cytosol	45.19	61.84
GSMUA_Achr9P20410_001	Banana	plastid	63.94	58.08
HORVU7Hr1G060130.2	Barley	plastid, vacuole	67.31	54.69
CDY25459	Canola	cytosol	41.83	53.37
CDY38486	Canola	cytosol	40.87	52.47
CDY22663	Canola	plastid	45.67	50.0

Protein Annotations

MapMan:10.2.2.3	Gene3D:2.60.40.200	GO:A0A078GZ68	UniProt:A0A078GZ68	EnsemblPlants:CDY30502	ProteinID:CDY30502
ProteinID:CDY30502.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004784	GO:GO:0005488	GO:GO:0006801
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009628	GO:GO:0009987	GO:GO:0016491
GO:GO:0019430	GO:GO:0046872	GO:GO:0055114	GO:GO:0071486	EnsemblPlantsGene:GSBRNA2T00045217001	InterPro:IPR036423
PFAM:PF00080	PRINTS:PR00068	ScanProsite:PS00087	ScanProsite:PS00332	PANTHER:PTHR10003	PANTHER:PTHR10003:SF34
MetaCyc:PWY-6854	InterPro:SOD-like_Cu/Zn_dom_sf	InterPro:SOD_Cu/Zn_/chaperone	InterPro:SOD_Cu/Zn_BS	InterPro:SOD_Cu_Zn_dom	SUPFAM:SSF49329
UniParc:UPI0004EE0B52	SEG:seg	:	:	:	:

Description

BnaA04g16310DSuperoxide dismutase [Cu-Zn] [Source:UniProtKB/TrEMBL;Acc:A0A078GZ68]

Coordinates

chrLK032254:-:110524..112265

Molecular Weight (calculated)

21440.4 Da

IEP (calculated)

7.078

GRAVY (calculated)

-0.059

Length

208 amino acids

Sequence
(BLAST)

001: MASHTFLSFS SPPRLLVSPP STLRSPFVGV SLNLHRPQSV SFSASKKSLT VVSAAKKAVA VLKGNSDVEG VVTLTQDDSA GPTKVSVRIT GLTPGPHGFH
101: LHEFGDTTNG CISTGPHFNP NNMTHGAPED EIRHAGDLGN IIANADGVAE TTLVDNQIPL TGPNSVVGRA FVVHELKDDL GKGGHELSLT TGNAGGRLAC
201: GVVGLTPL

Best Arabidopsis Sequence Match ( AT2G28190.1 )
(BLAST)

001: MAATNTILAF SSPSRLLIPP SSNPSTLRSS FRGVSLNNNN LHRLQSVSFA VKAPSKALTV VSAAKKAVAV LKGTSDVEGV VTLTQDDSGP TTVNVRITGL
101: TPGPHGFHLH EFGDTTNGCI STGPHFNPNN MTHGAPEDEC RHAGDLGNIN ANADGVAETT IVDNQIPLTG PNSVVGRAFV VHELKDDLGK GGHELSLTTG
201: NAGGRLACGV IGLTPL

Arabidopsis Description

CSD2Superoxide dismutase [Cu-Zn] 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O78310]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.