CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX95028	Canola	cytosol	99.34	99.34
AT1G08830.1	Thale cress	cytosol	96.05	96.05
CDY06331	Canola	cytosol	94.08	94.08
VIT_14s0030g00950.t01	Wine grape	cytosol	80.26	84.14
Solyc01g067740.2.1	Tomato	extracellular	83.55	83.55
OQU92597	Sorghum	cytosol	83.55	83.55
PGSC0003DMT400027651	Potato	cytosol	82.89	82.89
KRG96907	Soybean	extracellular, plasma membrane	82.24	82.24
KRH68647	Soybean	extracellular	82.24	82.24
TraesCS2D01G123300.1	Wheat	extracellular, golgi, unclear	80.26	80.26
VIT_14s0030g00830.t01	Wine grape	cytosol	79.61	80.13
Os03t0351500-01	Rice	extracellular	79.61	79.61
TraesCS2A01G121200.1	Wheat	golgi, unclear	80.26	77.71
KXG36882	Sorghum	cytosol	81.58	74.7
CDY22663	Canola	plastid	91.45	73.16
HORVU5Hr1G066230.1	Barley	cytosol	65.79	69.44
HORVU5Hr1G066930.1	Barley	cytosol	65.13	68.75
VIT_14s0036g01320.t01	Wine grape	cytosol	34.87	67.09
Zm00001d047479_P002	Maize	cytosol	70.39	57.22
CDY25459	Canola	cytosol	59.87	55.83
CDY38486	Canola	cytosol	58.55	54.94
HORVU2Hr1G021110.3	Barley	plastid	52.63	50.0
GSMUA_Achr8P09910_001	Banana	cytosol, peroxisome, plastid	47.37	48.65
Zm00001d029170_P004	Maize	cytosol	71.71	46.98
CDX77163	Canola	plastid	61.18	45.81
Zm00001d022505_P002	Maize	cytosol	76.97	45.35
CDY30502	Canola	plastid	61.84	45.19

Protein Annotations

MapMan:10.2.2.3	Gene3D:2.60.40.200	GO:A0A078E1Z7	EnsemblPlants:CDX93533	ProteinID:CDX93533	ProteinID:CDX93533.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0004784	GO:GO:0005488	GO:GO:0006801	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0046872	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00156205001
InterPro:IPR036423	PFAM:PF00080	PRINTS:PR00068	ScanProsite:PS00087	ScanProsite:PS00332	PANTHER:PTHR10003
PANTHER:PTHR10003:SF34	MetaCyc:PWY-6854	InterPro:SOD-like_Cu/Zn_dom_sf	InterPro:SOD_Cu/Zn_/chaperone	InterPro:SOD_Cu/Zn_BS	InterPro:SOD_Cu_Zn_dom
SUPFAM:SSF49329	UniParc:UPI0001BA82D2	SEG:seg	:	:	:

Description

BnaA06g05150D

Coordinates

chrLK031876:-:598076..600428

Molecular Weight (calculated)

15150.8 Da

IEP (calculated)

5.761

GRAVY (calculated)

-0.095

Length

152 amino acids

Sequence
(BLAST)

001: MGKGVAVLNS SEGVKGTIFF TQEGDGVTTV TGTVSGLKPG LHGFHVHALG DTTNGCMSTG PHFNPDGKQH GAPEDANRHA GDLGNIIVGD DGTATFTITD
101: CQIPLSGPNS IVGRAVVVHA DPDDLGKGGH ELSLATGNAG GRVACGIIGL QG

Best Arabidopsis Sequence Match ( AT1G08830.2 )
(BLAST)

001: MAKGVAVLNS SEGVTGTIFF TQEGDGVTTV SGTVSGLKPG LHGFHVHALG DTTNGCMSTG PHFNPDGKTH GAPEDANRHA GDLGNITVGD DGTATFTITD
101: CQIPLTGPNS IVGRAVVVHA DPDDLGKGGH ELSLATGNAG GRVACGIIGL QG

Arabidopsis Description

CSD1Superoxide dismutase [Cu-Zn] 1 [Source:UniProtKB/Swiss-Prot;Acc:P24704]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.