CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 2
cytosol 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	peroxisome
WoLF PSORT:	cytosol
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY16008
CDY21055
CDY26568
CDY58614

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G18100.1	CDY16008	AT1G12520.1	21798944
AT5G18100.1	CDY21055	AT1G12520.1	21798944
AT5G18100.1	CDY26568	AT1G12520.1	21798944
AT5G18100.1	CDY58614	AT1G12520.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra002133.1-P	Field mustard	cytosol	99.38	99.38
CDY25459	Canola	cytosol	95.06	94.48
AT5G18100.1	Thale cress	peroxisome	86.42	85.37
GSMUA_Achr4P06850_001	Banana	cytoskeleton, cytosol, plastid	71.6	72.5
Solyc03g062890.2.1	Tomato	cytosol	67.9	70.51
VIT_08s0007g07280.t01	Wine grape	cytosol, mitochondrion	66.67	69.23
PGSC0003DMT400059417	Potato	cytosol	68.52	67.27
KRH08504	Soybean	cytosol	69.14	67.07
Os03t0219200-01	Rice	extracellular	65.43	65.43
EER95258	Sorghum	cytosol	65.43	65.03
TraesCS4D01G242800.2	Wheat	cytosol	65.43	64.63
CDX95028	Canola	cytosol	54.94	58.55
CDX93533	Canola	cytosol	54.94	58.55
TraesCS4B01G243200.2	Wheat	cytosol	61.73	57.47
CDY06331	Canola	cytosol	53.7	57.24
HORVU4Hr1G067390.2	Barley	cytosol	63.58	55.98
TraesCS4A01G065800.2	Wheat	unclear	62.35	47.64
CDY22663	Canola	plastid	52.47	44.74
Zm00001d028232_P012	Maize	cytosol	48.77	42.02
CDY30502	Canola	plastid	52.47	40.87
CDX77163	Canola	plastid	50.0	39.9

Protein Annotations

MapMan:10.2.2.3	Gene3D:2.60.40.200	GO:A0A078HLH3	UniProt:A0A078HLH3	EnsemblPlants:CDY38486	ProteinID:CDY38486
ProteinID:CDY38486.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004784	GO:GO:0005488	GO:GO:0006801
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0019430
GO:GO:0046872	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00065933001	InterPro:IPR036423	PFAM:PF00080	PRINTS:PR00068
ScanProsite:PS00332	PANTHER:PTHR10003	PANTHER:PTHR10003:SF31	MetaCyc:PWY-6854	InterPro:SOD-like_Cu/Zn_dom_sf	InterPro:SOD_Cu/Zn_/chaperone
InterPro:SOD_Cu/Zn_BS	InterPro:SOD_Cu_Zn_dom	SUPFAM:SSF49329	UniParc:UPI0004EDF9CB	:	:

Description

BnaA10g16720DSuperoxide dismutase [Cu-Zn] [Source:UniProtKB/TrEMBL;Acc:A0A078HLH3]

Coordinates

chrLK032424:+:248857..250548

Molecular Weight (calculated)

16708.7 Da

IEP (calculated)

7.253

GRAVY (calculated)

-0.289

Length

162 amino acids

Sequence
(BLAST)

001: MGGPNLRAVA LIAGDKNIRG CLQFTQDTSG TTHVTGKISG LSPGFHGFHI HSFGDTTNGC NSTGPHFNPL NRVHGPPDEE ERHAGDLGNI FAGSDGVAEI
101: SIKDKQIPLS GQYSILGRAV VVYGDPDDLG RGGHKLSKST GNAGARVGCG IIGLQAAVDP KL

Best Arabidopsis Sequence Match ( AT5G18100.1 )
(BLAST)

001: MEAPRGNLRA VALIAGDNNV RGCLQFVQDI SGTTHVTGKI SGLSPGFHGF HIHSFGDTTN GCISTGPHFN PLNRVHGPPN EEERHAGDLG NILAGSNGVA
101: EILIKDKHIP LSGQYSILGR AVVVHADPDD LGKGGHKLSK STGNAGSRVG CGIIGLQSSA DAKL

Arabidopsis Description

CSD3Superoxide dismutase [Cu-Zn] 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FK60]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.