Factsheet for TraesCS4A01G065800.2

Subcellular Localization

min:

: max

Winner_takes_all: unclear

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	unclear
Any Predictor:	cytosol, mitochondrion, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	plastid

unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G399000.1
TraesCS2B01G417000.1
TraesCS2D01G396500.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G18100.1	TraesCS2A01G399000.1	AT1G12520.1	21798944
AT5G18100.1	TraesCS2B01G417000.1	AT1G12520.1	21798944
AT5G18100.1	TraesCS2D01G396500.1	AT1G12520.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G242800.2	Wheat	cytosol	72.64	93.9
Os03t0219200-01	Rice	extracellular	65.57	85.8
TraesCS4B01G243200.2	Wheat	cytosol	69.81	85.06
HORVU4Hr1G067390.2	Barley	cytosol	70.75	81.52
EER95258	Sorghum	cytosol	60.85	79.14
GSMUA_Achr4P06850_001	Banana	cytoskeleton, cytosol, plastid	55.19	73.12
VIT_08s0007g07280.t01	Wine grape	cytosol, mitochondrion	50.47	68.59
Solyc03g062890.2.1	Tomato	cytosol	49.53	67.31
PGSC0003DMT400059417	Potato	cytosol	50.47	64.85
CDY25459	Canola	cytosol	49.53	64.42
AT5G18100.1	Thale cress	peroxisome	49.53	64.02
KRH08504	Soybean	cytosol	50.0	63.47
Bra002133.1-P	Field mustard	cytosol	48.11	62.96
CDY38486	Canola	cytosol	47.64	62.35
TraesCS2A01G121200.1	Wheat	golgi, unclear	42.45	57.32
Zm00001d028232_P012	Maize	cytosol	42.92	48.4
TraesCS7A01G292100.1	Wheat	plastid	40.57	42.79

Protein Annotations

MapMan:10.2.2.3	Gene3D:2.60.40.200	GO:GO:0003674	GO:GO:0003824	GO:GO:0004784	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0005777
GO:GO:0006801	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009628	GO:GO:0009987
GO:GO:0046872	GO:GO:0055114	GO:GO:0071457	GO:GO:0071472	GO:GO:0071484	GO:GO:0071486
GO:GO:0071493	InterPro:IPR036423	PFAM:PF00080	PRINTS:PR00068	ScanProsite:PS00087	PANTHER:PTHR10003
PANTHER:PTHR10003:SF31	InterPro:SOD-like_Cu/Zn_dom_sf	InterPro:SOD_Cu/Zn_/chaperone	InterPro:SOD_Cu/Zn_BS	InterPro:SOD_Cu_Zn_dom	SUPFAM:SSF49329
EnsemblPlantsGene:TraesCS4A01G065800	EnsemblPlants:TraesCS4A01G065800.2	TIGR:cd00305	SEG:seg	:	:

Description

No Description!

Coordinates

chr4A:+:63088359..63091717

Molecular Weight (calculated)

22204.1 Da

IEP (calculated)

8.890

GRAVY (calculated)

-0.302

Length

212 amino acids

Sequence
(BLAST)

001: MAGKPGSLKG VALISGGGAD SAVAGALHFV QDPSSGYTEV RGRVSGLAPG LHGFHIHAFG DTTNGCNSTG PHFNPHNKSH GAPVDDERHV GDLGNIQANK
101: DGVAEIFIKD LQISLRGPHS ILGRAVVVHA DSDDLGKGGH ELSKSTGNAG ARIGCGKWQT LYLFSTLSKC THKVSLEFSR LFNKKNTRAV GVHVGIAARR
201: QGNSDIVEDH TF

Best Arabidopsis Sequence Match ( AT5G18100.1 )
(BLAST)

001: MEAPRGNLRA VALIAGDNNV RGCLQFVQDI SGTTHVTGKI SGLSPGFHGF HIHSFGDTTN GCISTGPHFN PLNRVHGPPN EEERHAGDLG NILAGSNGVA
101: EILIKDKHIP LSGQYSILGR AVVVHADPDD LGKGGHKLSK STGNAGSRVG CGIIGLQSSA DAKL

Arabidopsis Description

CSD3Superoxide dismutase [Cu-Zn] 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FK60]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.