Factsheet for Zm00001d028232_P012

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d002611_P002
Zm00001d026069_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G18100.1	Zm00001d002611_P002	AT1G12520.1	21798944
AT5G18100.1	Zm00001d026069_P001	AT1G12520.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER95258	Sorghum	cytosol	55.32	63.8
Os03t0219200-01	Rice	extracellular	49.47	57.41
VIT_08s0007g07280.t01	Wine grape	cytosol, mitochondrion	45.74	55.13
TraesCS4D01G242800.2	Wheat	cytosol	47.87	54.88
GSMUA_Achr4P06850_001	Banana	cytoskeleton, cytosol, plastid	44.68	52.5
Solyc03g062890.2.1	Tomato	cytosol	43.09	51.92
TraesCS4B01G243200.2	Wheat	cytosol	47.34	51.15
KRH08504	Soybean	cytosol	44.68	50.3
PGSC0003DMT400059417	Potato	cytosol	43.62	49.7
Bra002133.1-P	Field mustard	cytosol	42.55	49.38
CDY25459	Canola	cytosol	42.55	49.08
CDY38486	Canola	cytosol	42.02	48.77
HORVU4Hr1G067390.2	Barley	cytosol	46.81	47.83
AT5G18100.1	Thale cress	peroxisome	40.43	46.34
TraesCS4A01G065800.2	Wheat	unclear	48.4	42.92
Zm00001d047479_P002	Maize	cytosol	35.64	35.83
Zm00001d031908_P001	Maize	plastid	38.83	35.44
Zm00001d029170_P004	Maize	cytosol	37.23	30.17
Zm00001d022505_P002	Maize	cytosol	39.89	29.07

Protein Annotations

MapMan:10.2.2.3	EntrezGene:100282741	Gene3D:2.60.40.200	UniProt:A0A1D6JTE8	GO:GO:0003674	GO:GO:0003824
GO:GO:0004784	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005773	GO:GO:0005777	GO:GO:0006801	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009628	GO:GO:0009987	GO:GO:0019430	GO:GO:0046872	GO:GO:0055114	GO:GO:0071457
GO:GO:0071472	GO:GO:0071484	GO:GO:0071486	GO:GO:0071493	InterPro:IPR036423	ProteinID:ONL95139.1
PFAM:PF00080	PRINTS:PR00068	ScanProsite:PS00087	PANTHER:PTHR10003	PANTHER:PTHR10003:SF31	InterPro:SOD-like_Cu/Zn_dom_sf
InterPro:SOD_Cu/Zn_/chaperone	InterPro:SOD_Cu/Zn_BS	InterPro:SOD_Cu_Zn_dom	SUPFAM:SSF49329	UniParc:UPI00084532FD	EnsemblPlantsGene:Zm00001d028232
EnsemblPlants:Zm00001d028232_P012	EnsemblPlants:Zm00001d028232_T012	:	:	:	:

Description

Superoxide dismutase

Coordinates

chr1:-:27414309..27420137

Molecular Weight (calculated)

20847.6 Da

IEP (calculated)

6.438

GRAVY (calculated)

-0.437

Length

188 amino acids

Sequence
(BLAST)

001: MGVGYTEVRG KVTGLTPGRH GFHIHVFGDT TNGCNSTGPH FNPHNKPHGA PFDDERHLGD LGNIVANEDG DAEVFIRDLQ ISLSGPHSIL GRAVVVHADP
101: DDLGRDRYQP TPPLVKHHIR PEDMLGELGY PYDRYVPKYS LQVELPHIVV QCYKWEKAAH CPAALQTSKY FDSCFPFSGI ISTLQIPE

Best Arabidopsis Sequence Match ( AT5G18100.1 )
(BLAST)

001: MEAPRGNLRA VALIAGDNNV RGCLQFVQDI SGTTHVTGKI SGLSPGFHGF HIHSFGDTTN GCISTGPHFN PLNRVHGPPN EEERHAGDLG NILAGSNGVA
101: EILIKDKHIP LSGQYSILGR AVVVHADPDD LGKGGHKLSK STGNAGSRVG CGIIGLQSSA DAKL

Arabidopsis Description

CSD3Superoxide dismutase [Cu-Zn] 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FK60]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.