CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
OQU82186

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G18100.1	OQU82186	AT1G12520.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0219200-01	Rice	extracellular	85.28	85.8
TraesCS4D01G242800.2	Wheat	cytosol	80.98	80.49
GSMUA_Achr4P06850_001	Banana	cytoskeleton, cytosol, plastid	73.62	75.0
VIT_08s0007g07280.t01	Wine grape	cytosol, mitochondrion	70.55	73.72
TraesCS4B01G243200.2	Wheat	cytosol	76.69	71.84
Solyc03g062890.2.1	Tomato	cytosol	68.1	71.15
CDY25459	Canola	cytosol	68.71	68.71
PGSC0003DMT400059417	Potato	cytosol	68.71	67.88
KRH08504	Soybean	cytosol	68.71	67.07
HORVU4Hr1G067390.2	Barley	cytosol	75.46	66.85
Bra002133.1-P	Field mustard	cytosol	65.64	66.05
CDY38486	Canola	cytosol	65.03	65.43
AT5G18100.1	Thale cress	peroxisome	65.64	65.24
TraesCS4A01G065800.2	Wheat	unclear	79.14	60.85
OQU92597	Sorghum	cytosol	55.83	59.87
KXG36882	Sorghum	cytosol	58.28	57.23
Zm00001d028232_P012	Maize	cytosol	63.8	55.32
EES15166	Sorghum	plastid	54.6	43.2

Protein Annotations

MapMan:10.2.2.3	Gene3D:2.60.40.200	UniProt:C5WSP7	EnsemblPlants:EER95258	ProteinID:EER95258	ProteinID:EER95258.2
GO:GO:0003674	GO:GO:0003824	GO:GO:0004784	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0005777	GO:GO:0006801	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0009628	GO:GO:0009987	GO:GO:0016491	GO:GO:0019430
GO:GO:0046872	GO:GO:0055114	GO:GO:0071457	GO:GO:0071472	GO:GO:0071484	GO:GO:0071486
GO:GO:0071493	InterPro:IPR036423	PFAM:PF00080	PRINTS:PR00068	ScanProsite:PS00087	ScanProsite:PS00332
PANTHER:PTHR10003	PANTHER:PTHR10003:SF31	MetaCyc:PWY-6854	InterPro:SOD-like_Cu/Zn_dom_sf	InterPro:SOD_Cu/Zn_/chaperone	InterPro:SOD_Cu/Zn_BS
InterPro:SOD_Cu_Zn_dom	EnsemblPlantsGene:SORBI_3001G453800	SUPFAM:SSF49329	UniParc:UPI00081AD683	SEG:seg	:

Description

hypothetical protein

Coordinates

chr1:+:73019344..73022885

Molecular Weight (calculated)

16716.7 Da

IEP (calculated)

7.408

GRAVY (calculated)

-0.227

Length

163 amino acids

Sequence
(BLAST)

001: MAGKAGGLKG VALIGGGANS TVAGALHFFE DPSTRYTEVR GKVTGLTPGR HGFHIHVFGD TTNGCNSTGP HFNPHNKPHG APFDKERHAG DLGNIVANED
101: GVAEVFIRDL QISLSGPHSI LGRAVVVHAD PDDLGRGGHE LSKSTGNAGA RIGCGIIGIQ SSV

Best Arabidopsis Sequence Match ( AT5G18100.1 )
(BLAST)

001: MEAPRGNLRA VALIAGDNNV RGCLQFVQDI SGTTHVTGKI SGLSPGFHGF HIHSFGDTTN GCISTGPHFN PLNRVHGPPN EEERHAGDLG NILAGSNGVA
101: EILIKDKHIP LSGQYSILGR AVVVHADPDD LGKGGHKLSK STGNAGSRVG CGIIGLQSSA DAKL

Arabidopsis Description

CSD3Superoxide dismutase [Cu-Zn] 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FK60]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.