CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 2
mitochondrion 2
cytosol 3
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH57335

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G18100.1	KRH57335	AT1G12520.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g062890.2.1	Tomato	cytosol	72.46	77.56
VIT_08s0007g07280.t01	Wine grape	cytosol, mitochondrion	70.06	75.0
PGSC0003DMT400059417	Potato	cytosol	73.05	73.94
Bra002133.1-P	Field mustard	cytosol	67.66	69.75
CDY25459	Canola	cytosol	67.66	69.33
CDY38486	Canola	cytosol	67.07	69.14
Os03t0219200-01	Rice	extracellular	67.07	69.14
AT5G18100.1	Thale cress	peroxisome	67.66	68.9
EER95258	Sorghum	cytosol	67.07	68.71
GSMUA_Achr4P06850_001	Banana	cytoskeleton, cytosol, plastid	65.27	68.12
TraesCS4D01G242800.2	Wheat	cytosol	64.67	65.85
KRG96907	Soybean	extracellular, plasma membrane	56.89	62.5
KRH68647	Soybean	extracellular	56.29	61.84
TraesCS4B01G243200.2	Wheat	cytosol	62.28	59.77
HORVU4Hr1G067390.2	Barley	cytosol	62.87	57.07
TraesCS4A01G065800.2	Wheat	unclear	63.47	50.0
KRH26536	Soybean	plastid	51.5	46.99
Zm00001d028232_P012	Maize	cytosol	50.3	44.68
KRH25109	Soybean	plastid	49.1	40.2
KRH30559	Soybean	plastid	49.7	39.71

Protein Annotations

MapMan:10.2.2.3	Gene3D:2.60.40.200	EMBL:ACUP02010182	EnsemblPlantsGene:GLYMA_16G153900	GO:GO:0003674	GO:GO:0003824
GO:GO:0004784	GO:GO:0005488	GO:GO:0005507	GO:GO:0005575	GO:GO:0005576	GO:GO:0005615
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0005777	GO:GO:0006801
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009628	GO:GO:0009987
GO:GO:0016491	GO:GO:0019430	GO:GO:0046872	GO:GO:0055114	GO:GO:0071457	GO:GO:0071472
GO:GO:0071484	GO:GO:0071486	GO:GO:0071493	UniProt:I1MNV0	InterPro:IPR036423	EnsemblPlants:KRH08504
ProteinID:KRH08504	ProteinID:KRH08504.1	PFAM:PF00080	PRINTS:PR00068	ScanProsite:PS00087	ScanProsite:PS00332
PANTHER:PTHR10003	PANTHER:PTHR10003:SF31	MetaCyc:PWY-6854	InterPro:SOD-like_Cu/Zn_dom_sf	InterPro:SOD_Cu/Zn_/chaperone	InterPro:SOD_Cu/Zn_BS
InterPro:SOD_Cu_Zn_dom	SUPFAM:SSF49329	UniParc:UPI00023D6DB4	:	:	:

Description

hypothetical protein

Coordinates

chr16:-:31445759..31449112

Molecular Weight (calculated)

17180.2 Da

IEP (calculated)

7.825

GRAVY (calculated)

-0.229

Length

167 amino acids

Sequence
(BLAST)

001: MEAAKGTVKG VAIIIGDNNI RGSLQFLQHP NGTTHVTGRV TGLSQGFHGF HIHAFGDTTN GCNSTVLTSS TPGPHFNPFK KDHGAPSDDK RHAGDLGNIA
101: AGPDGVAEIS IRDRQIPLTG VHSIIGRAVV VHADPDDLGR GGHELSKTTG NAGARVACGI IGLQSSV

Best Arabidopsis Sequence Match ( AT5G18100.1 )
(BLAST)

001: MEAPRGNLRA VALIAGDNNV RGCLQFVQDI SGTTHVTGKI SGLSPGFHGF HIHSFGDTTN GCISTGPHFN PLNRVHGPPN EEERHAGDLG NILAGSNGVA
101: EILIKDKHIP LSGQYSILGR AVVVHADPDD LGKGGHKLSK STGNAGSRVG CGIIGLQSSA DAKL

Arabidopsis Description

CSD3Superoxide dismutase [Cu-Zn] 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FK60]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.