CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	secretory
EpiLoc:	extracellular
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	plastid

extracellular: 20458513
nucleus: 21132161
extracellular: 22945350

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 22945350 doi

C Liao, F Hochholdinger, C Li

Key Laboratory of Plant-Soil Interactions, Ministry of Education, Center for Resources, Environment and Food Security, China Agricultural University, Beijing, China.

msms PMID: 20458513 doi

S Komatsu, Y Kobayashi, K Nishizawa, Y Nanjo, K Furukawa

National Institute of Crop Science, Kannondai 2-1-18, Tsukuba, 305-8518, Japan. skomatsu@affrc.go.jp

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG96907	Soybean	extracellular, plasma membrane	94.74	94.74
OQU92597	Sorghum	cytosol	84.87	84.87
VIT_14s0030g00950.t01	Wine grape	cytosol	80.26	84.14
Os03t0351500-01	Rice	extracellular	83.55	83.55
Solyc01g067740.2.1	Tomato	extracellular	82.89	82.89
AT1G08830.1	Thale cress	cytosol	82.89	82.89
CDX93533	Canola	cytosol	82.24	82.24
PGSC0003DMT400027651	Potato	cytosol	82.24	82.24
CDY06331	Canola	cytosol	81.58	81.58
CDX95028	Canola	cytosol	81.58	81.58
Bra031642.1-P	Field mustard	cytosol	81.58	81.58
VIT_14s0030g00830.t01	Wine grape	cytosol	80.26	80.79
TraesCS2D01G123300.1	Wheat	extracellular, golgi, unclear	77.63	77.63
TraesCS2A01G121200.1	Wheat	golgi, unclear	78.95	76.43
KXG36882	Sorghum	cytosol	82.89	75.9
HORVU5Hr1G066230.1	Barley	cytosol	63.16	66.67
HORVU5Hr1G066930.1	Barley	cytosol	61.84	65.28
VIT_14s0036g01320.t01	Wine grape	cytosol	32.89	63.29
CDY22663	Canola	plastid	78.29	62.63
Zm00001d047479_P002	Maize	cytosol	71.05	57.75
KRH08504	Soybean	cytosol	61.84	56.29
HORVU2Hr1G021110.3	Barley	plastid	51.97	49.38
KRH26536	Soybean	plastid	58.55	48.63
KRH25109	Soybean	plastid	63.82	47.55
Zm00001d029170_P004	Maize	cytosol	72.37	47.41
GSMUA_Achr8P09910_001	Banana	cytosol, peroxisome, plastid	46.05	47.3
Zm00001d022505_P002	Maize	cytosol	78.95	46.51
KRH30559	Soybean	plastid	61.18	44.5

Protein Annotations

MapMan:10.2.2.3	Gene3D:2.60.40.200	EMBL:ACUP02002121	EnsemblPlantsGene:GLYMA_03G242900	GO:GO:0003674	GO:GO:0003824
GO:GO:0004784	GO:GO:0005488	GO:GO:0005507	GO:GO:0005575	GO:GO:0005576	GO:GO:0005615
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006801	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009987	GO:GO:0016491	GO:GO:0019430	GO:GO:0046872
GO:GO:0055114	UniProt:I1JRI7	InterPro:IPR036423	ProteinID:KRH68646.1	EnsemblPlants:KRH68647	ProteinID:KRH68647
ProteinID:KRH68647.1	PFAM:PF00080	PRINTS:PR00068	ScanProsite:PS00087	ScanProsite:PS00332	PANTHER:PTHR10003
PANTHER:PTHR10003:SF34	MetaCyc:PWY-6854	InterPro:SOD-like_Cu/Zn_dom_sf	InterPro:SOD_Cu/Zn_/chaperone	InterPro:SOD_Cu/Zn_BS	InterPro:SOD_Cu_Zn_dom
SUPFAM:SSF49329	UniParc:UPI0001BA6474	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:44075952..44079373

Molecular Weight (calculated)

15236.7 Da

IEP (calculated)

5.995

GRAVY (calculated)

-0.204

Length

152 amino acids

Sequence
(BLAST)

001: MVKAVAVLGS SEGVTGTIHF VQEGSGPTTV TGSLAGLKPG LHGFHVHALG DTTNGCLSTG SHFNPNNKEH GAPEDENRHA GDLGNVNVGD DGTVSFTITD
101: SQIPLTGPNN IIGRAVVVHA DPDDLGKGGH ELSKTTGNAG GRVACGIIGL QG

Best Arabidopsis Sequence Match ( AT1G08830.2 )
(BLAST)

001: MAKGVAVLNS SEGVTGTIFF TQEGDGVTTV SGTVSGLKPG LHGFHVHALG DTTNGCMSTG PHFNPDGKTH GAPEDANRHA GDLGNITVGD DGTATFTITD
101: CQIPLTGPNS IVGRAVVVHA DPDDLGKGGH ELSLATGNAG GRVACGIIGL QG

Arabidopsis Description

CSD1Superoxide dismutase [Cu-Zn] 1 [Source:UniProtKB/Swiss-Prot;Acc:P24704]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.