Factsheet for VIT_14s0036g01320.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 4
plastid 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, peroxisome, plastid, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
PTS1:	peroxisome
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_14s0030g00830.t01	Wine grape	cytosol	77.22	40.4
VIT_14s0030g00950.t01	Wine grape	cytosol	67.09	36.55
CDX93533	Canola	cytosol	67.09	34.87
CDX95028	Canola	cytosol	67.09	34.87
AT1G08830.1	Thale cress	cytosol	67.09	34.87
Bra031642.1-P	Field mustard	cytosol	65.82	34.21
CDY06331	Canola	cytosol	65.82	34.21
Solyc01g067740.2.1	Tomato	extracellular	64.56	33.55
PGSC0003DMT400027651	Potato	cytosol	64.56	33.55
Os03t0351500-01	Rice	extracellular	64.56	33.55
OQU92597	Sorghum	cytosol	63.29	32.89
KRH68647	Soybean	extracellular	63.29	32.89
KRG96907	Soybean	extracellular, plasma membrane	62.03	32.24
TraesCS2D01G123300.1	Wheat	extracellular, golgi, unclear	60.76	31.58
KXG36882	Sorghum	cytosol	65.82	31.33
HORVU5Hr1G066230.1	Barley	cytosol	56.96	31.25
TraesCS2A01G121200.1	Wheat	golgi, unclear	60.76	30.57
HORVU5Hr1G066930.1	Barley	cytosol	54.43	29.86
VIT_08s0007g07280.t01	Wine grape	cytosol, mitochondrion	58.23	29.49
CDY22663	Canola	plastid	67.09	27.89
Zm00001d047479_P002	Maize	cytosol	63.29	26.74
Zm00001d029170_P004	Maize	cytosol	63.29	21.55
GSMUA_Achr8P09910_001	Banana	cytosol, peroxisome, plastid	37.97	20.27
Zm00001d022505_P002	Maize	cytosol	63.29	19.38
VIT_06s0061g00750.t01	Wine grape	extracellular, plastid	50.63	18.87
HORVU2Hr1G021110.3	Barley	plastid	36.71	18.12

Protein Annotations

MapMan:10.2.2.3	Gene3D:2.60.40.200	ProteinID:CBI22327	ProteinID:CBI22327.3	UniProt:E0CU69	EMBL:FN595241
GO:GO:0003674	GO:GO:0003824	GO:GO:0004784	GO:GO:0005488	GO:GO:0005507	GO:GO:0005575
GO:GO:0005576	GO:GO:0005615	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006801
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009987	GO:GO:0019430
GO:GO:0046872	InterPro:IPR036423	PFAM:PF00080	PRINTS:PR00068	PANTHER:PTHR10003	PANTHER:PTHR10003:SF63
InterPro:SOD-like_Cu/Zn_dom_sf	InterPro:SOD_Cu/Zn_/chaperone	InterPro:SOD_Cu_Zn_dom	SUPFAM:SSF49329	UniParc:UPI00015CC310	ArrayExpress:VIT_14s0036g01320
EnsemblPlantsGene:VIT_14s0036g01320	EnsemblPlants:VIT_14s0036g01320.t01	RefSeq:XP_002264625	RefSeq:XP_002264625.2	:	:

Description

No Description!

Coordinates

chr14:-:12383065..12384913

Molecular Weight (calculated)

8595.2 Da

IEP (calculated)

6.232

GRAVY (calculated)

-0.394

Length

79 amino acids

Sequence
(BLAST)

1: MTNGCMSTRP YFNPSRKDHG ALEDKNSHVG DLGNVIVGED GTINFKIVDK QIPFTGSNSI VERVVVVHID PDDLGKGKL

Best Arabidopsis Sequence Match ( AT1G08830.2 )
(BLAST)

001: MAKGVAVLNS SEGVTGTIFF TQEGDGVTTV SGTVSGLKPG LHGFHVHALG DTTNGCMSTG PHFNPDGKTH GAPEDANRHA GDLGNITVGD DGTATFTITD
101: CQIPLTGPNS IVGRAVVVHA DPDDLGKGGH ELSLATGNAG GRVACGIIGL QG

Arabidopsis Description

CSD1Superoxide dismutase [Cu-Zn] 1 [Source:UniProtKB/Swiss-Prot;Acc:P24704]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.