Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 1
- golgi 1
- extracellular 1
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX93533 | Canola | cytosol | 96.05 | 96.05 |
| CDX95028 | Canola | cytosol | 95.39 | 95.39 |
| Bra031642.1-P | Field mustard | cytosol | 94.08 | 94.08 |
| CDY06331 | Canola | cytosol | 94.08 | 94.08 |
| Solyc01g067740.2.1 | Tomato | extracellular | 84.87 | 84.87 |
| PGSC0003DMT400027651 | Potato | cytosol | 84.21 | 84.21 |
| OQU92597 | Sorghum | cytosol | 83.55 | 83.55 |
| VIT_14s0030g00950.t01 | Wine grape | cytosol | 79.61 | 83.45 |
| KRH68647 | Soybean | extracellular | 82.89 | 82.89 |
| KRG96907 | Soybean | extracellular, plasma membrane | 82.89 | 82.89 |
| TraesCS2D01G123300.1 | Wheat | extracellular, golgi, unclear | 80.26 | 80.26 |
| Os03t0351500-01 | Rice | extracellular | 79.61 | 79.61 |
| VIT_14s0030g00830.t01 | Wine grape | cytosol | 78.95 | 79.47 |
| TraesCS2A01G121200.1 | Wheat | golgi, unclear | 80.26 | 77.71 |
| KXG36882 | Sorghum | cytosol | 81.58 | 74.7 |
| CDY22663 | Canola | plastid | 90.13 | 72.11 |
| HORVU5Hr1G066230.1 | Barley | cytosol | 65.13 | 68.75 |
| HORVU5Hr1G066930.1 | Barley | cytosol | 64.47 | 68.06 |
| VIT_14s0036g01320.t01 | Wine grape | cytosol | 34.87 | 67.09 |
| Zm00001d047479_P002 | Maize | cytosol | 70.39 | 57.22 |
| AT5G18100.1 | Thale cress | peroxisome | 57.89 | 53.66 |
| HORVU2Hr1G021110.3 | Barley | plastid | 51.97 | 49.38 |
| GSMUA_Achr8P09910_001 | Banana | cytosol, peroxisome, plastid | 46.71 | 47.97 |
| Zm00001d029170_P004 | Maize | cytosol | 71.71 | 46.98 |
| Zm00001d022505_P002 | Maize | cytosol | 76.32 | 44.96 |
| AT2G28190.1 | Thale cress | plastid | 63.82 | 44.91 |
Protein Annotations
| MapMan:10.2.2.3 | Gene3D:2.60.40.200 | EntrezGene:837405 | UniProt:A0A178WMU1 | ProteinID:AAF99769.1 | ProteinID:AEE28354.1 |
| ProteinID:AEE28355.1 | ArrayExpress:AT1G08830 | EnsemblPlantsGene:AT1G08830 | RefSeq:AT1G08830 | TAIR:AT1G08830 | RefSeq:AT1G08830-TAIR-G |
| EnsemblPlants:AT1G08830.1 | TAIR:AT1G08830.1 | EMBL:AY050932 | EMBL:AY087273 | EMBL:AY091168 | Unigene:At.25177 |
| Symbol:CSD1 | EMBL:EF408820 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004784 | GO:GO:0005488 |
| GO:GO:0005507 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005576 | GO:GO:0005615 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0006412 | GO:GO:0006801 |
| GO:GO:0006950 | GO:GO:0006979 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009058 |
| GO:GO:0009605 | GO:GO:0009607 | GO:GO:0009628 | GO:GO:0009651 | GO:GO:0009987 | GO:GO:0010039 |
| GO:GO:0010193 | GO:GO:0016209 | GO:GO:0016491 | GO:GO:0019430 | GO:GO:0019538 | GO:GO:0034599 |
| GO:GO:0035195 | GO:GO:0040029 | GO:GO:0042742 | GO:GO:0046688 | GO:GO:0046872 | GO:GO:0055114 |
| GO:GO:0071280 | GO:GO:0071329 | GO:GO:0071457 | GO:GO:0071472 | GO:GO:0071484 | GO:GO:0071493 |
| GO:GO:0098869 | InterPro:IPR036423 | RefSeq:NP_001077494.1 | RefSeq:NP_172360.1 | ProteinID:OAP18422.1 | UniProt:P24704 |
| PFAM:PF00080 | PO:PO:0000013 | PO:PO:0000014 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0005020 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009001 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009049 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 |
| PRINTS:PR00068 | ScanProsite:PS00087 | ScanProsite:PS00332 | PANTHER:PTHR10003 | PANTHER:PTHR10003:SF34 | InterPro:SOD-like_Cu/Zn_dom_sf |
| InterPro:SOD_Cu/Zn_/chaperone | InterPro:SOD_Cu/Zn_BS | InterPro:SOD_Cu_Zn_dom | SUPFAM:SSF49329 | UniParc:UPI000000142D | EMBL:X60935 |
Description
CSD1Superoxide dismutase [Cu-Zn] 1 [Source:UniProtKB/Swiss-Prot;Acc:P24704]
Coordinates
chr1:+:2827060..2829315
Molecular Weight (calculated)
15098.6 Da
IEP (calculated)
5.381
GRAVY (calculated)
-0.076
Length
152 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKGVAVLNS SEGVTGTIFF TQEGDGVTTV SGTVSGLKPG LHGFHVHALG DTTNGCMSTG PHFNPDGKTH GAPEDANRHA GDLGNITVGD DGTATFTITD
101: CQIPLTGPNS IVGRAVVVHA DPDDLGKGGH ELSLATGNAG GRVACGIIGL QG
101: CQIPLTGPNS IVGRAVVVHA DPDDLGKGGH ELSLATGNAG GRVACGIIGL QG
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.