CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	secretory
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra031642.1-P	Field mustard	cytosol	100.0	100.0
CDX93533	Canola	cytosol	94.08	94.08
AT1G08830.1	Thale cress	cytosol	94.08	94.08
CDX95028	Canola	cytosol	93.42	93.42
OQU92597	Sorghum	cytosol	83.55	83.55
VIT_14s0030g00950.t01	Wine grape	cytosol	79.61	83.45
Solyc01g067740.2.1	Tomato	extracellular	82.89	82.89
PGSC0003DMT400027651	Potato	cytosol	82.24	82.24
KRG96907	Soybean	extracellular, plasma membrane	82.24	82.24
KRH68647	Soybean	extracellular	81.58	81.58
TraesCS2D01G123300.1	Wheat	extracellular, golgi, unclear	79.61	79.61
VIT_14s0030g00830.t01	Wine grape	cytosol	78.95	79.47
Os03t0351500-01	Rice	extracellular	78.95	78.95
TraesCS2A01G121200.1	Wheat	golgi, unclear	79.61	77.07
KXG36882	Sorghum	cytosol	81.58	74.7
CDY22663	Canola	plastid	92.11	73.68
HORVU5Hr1G066230.1	Barley	cytosol	63.82	67.36
HORVU5Hr1G066930.1	Barley	cytosol	63.16	66.67
VIT_14s0036g01320.t01	Wine grape	cytosol	34.21	65.82
Zm00001d047479_P002	Maize	cytosol	69.74	56.68
CDY25459	Canola	cytosol	58.55	54.6
CDY38486	Canola	cytosol	57.24	53.7
HORVU2Hr1G021110.3	Barley	plastid	52.63	50.0
GSMUA_Achr8P09910_001	Banana	cytosol, peroxisome, plastid	46.71	47.97
CDX77163	Canola	plastid	63.16	47.29
CDY30502	Canola	plastid	63.82	46.63
Zm00001d029170_P004	Maize	cytosol	71.05	46.55
Zm00001d022505_P002	Maize	cytosol	76.32	44.96

Protein Annotations

MapMan:10.2.2.3	Gene3D:2.60.40.200	ProteinID:ABE28385.1	unigene:Bna.2883	EnsemblPlants:CDY06331	ProteinID:CDY06331
ProteinID:CDY06331.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004784	GO:GO:0005488	GO:GO:0006801
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0019430
GO:GO:0046872	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00122261001	InterPro:IPR036423	PFAM:PF00080	PRINTS:PR00068
ScanProsite:PS00087	ScanProsite:PS00332	PANTHER:PTHR10003	PANTHER:PTHR10003:SF34	MetaCyc:PWY-6854	GO:Q0VH22
UniProt:Q0VH22	InterPro:SOD-like_Cu/Zn_dom_sf	InterPro:SOD_Cu/Zn_/chaperone	InterPro:SOD_Cu/Zn_BS	InterPro:SOD_Cu_Zn_dom	SUPFAM:SSF49329
UniParc:UPI0000DB95B5	:	:	:	:	:

Description

BnaA09g48720DSuperoxide dismutase [Cu-Zn] [Source:UniProtKB/TrEMBL;Acc:Q0VH22]

Coordinates

chrLK031968:+:838190..840031

Molecular Weight (calculated)

15180.7 Da

IEP (calculated)

6.056

GRAVY (calculated)

-0.171

Length

152 amino acids

Sequence
(BLAST)

001: MAKGVAVLNS SEGVKGTIFF TQEGDGATTV TGTVSGLKPG PHGFHVHALG DTTNGCMSTG PHFNPDGKTH GAPEDANRHA GDLGNIIVGD DGTATFTITD
101: SQIPLTGPNS IVGRAVVVHA ERDDLGKGGH ELSLSTGNAG GRVACGIIGL QG

Best Arabidopsis Sequence Match ( AT1G08830.2 )
(BLAST)

001: MAKGVAVLNS SEGVTGTIFF TQEGDGVTTV SGTVSGLKPG LHGFHVHALG DTTNGCMSTG PHFNPDGKTH GAPEDANRHA GDLGNITVGD DGTATFTITD
101: CQIPLTGPNS IVGRAVVVHA DPDDLGKGGH ELSLATGNAG GRVACGIIGL QG

Arabidopsis Description

CSD1Superoxide dismutase [Cu-Zn] 1 [Source:UniProtKB/Swiss-Prot;Acc:P24704]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.