CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY30502	Canola	plastid	96.06	93.75
AT2G28190.1	Thale cress	plastid	74.38	69.91
KRH26536	Soybean	plastid	60.59	67.21
TraesCS7D01G290700.2	Wheat	plastid	66.5	66.83
TraesCS7A01G292100.1	Wheat	plastid	66.01	66.67
TraesCS7B01G197300.1	Wheat	golgi	65.52	66.17
GSMUA_Achr10P...	Banana	plastid	68.97	64.81
Zm00001d031908_P001	Maize	plastid	65.52	64.56
EES15166	Sorghum	plastid	65.52	64.56
PGSC0003DMT400001102	Potato	plastid	67.0	63.26
VIT_06s0061g00750.t01	Wine grape	extracellular, plastid	66.01	63.21
CDY06331	Canola	cytosol	47.29	63.16
Os08t0561700-01	Rice	extracellular	65.52	63.03
Solyc11g066390.1.1	Tomato	extracellular, plastid	67.0	62.67
CDX95028	Canola	cytosol	45.81	61.18
CDX93533	Canola	cytosol	45.81	61.18
Bra011971.1-P	Field mustard	plastid	57.64	57.64
GSMUA_Achr9P20410_001	Banana	plastid	64.04	56.77
HORVU7Hr1G060130.2	Barley	plastid, vacuole	66.5	52.73
CDY25459	Canola	cytosol	40.89	50.92
CDY38486	Canola	cytosol	39.9	50.0
CDY22663	Canola	plastid	46.31	49.47

Protein Annotations

MapMan:10.2.2.3	Gene3D:2.60.40.200	GO:A0A078CQ26	EnsemblPlants:CDX77163	ProteinID:CDX77163	ProteinID:CDX77163.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0004784	GO:GO:0005488	GO:GO:0006801	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0009628	GO:GO:0009987	GO:GO:0046872	GO:GO:0055114
GO:GO:0071486	EnsemblPlantsGene:GSBRNA2T00127784001	InterPro:IPR036423	PFAM:PF00080	PRINTS:PR00068	ScanProsite:PS00087
ScanProsite:PS00332	PANTHER:PTHR10003	PANTHER:PTHR10003:SF34	MetaCyc:PWY-6854	InterPro:SOD-like_Cu/Zn_dom_sf	InterPro:SOD_Cu/Zn_/chaperone
InterPro:SOD_Cu/Zn_BS	InterPro:SOD_Cu_Zn_dom	SUPFAM:SSF49329	UniParc:UPI0004EF1702	SEG:seg	:

Description

BnaC04g39580D

Coordinates

chrLK031809:+:1569631..1571699

Molecular Weight (calculated)

20978.8 Da

IEP (calculated)

7.370

GRAVY (calculated)

-0.145

Length

203 amino acids

Sequence
(BLAST)

001: MASHTFLSFS SPPRLLVSPP STLRSSFGGV SLNLHRPQSV SFPASKKSLT VVSAAKKAVA VLKGNSDVEG VVTLTQEDTA GPTKVSVRIT GLTPGPHGFH
101: LHEFGDTTNG CISTGPHFNP NNMTHGAPED EIRHAGDLGN ITAKADGVAE TTLVDNQIPL TGPNSVVGRA FVVHELKDDL GKGGHELSLT TGNAGGRLAC
201: GMV

Best Arabidopsis Sequence Match ( AT2G28190.1 )
(BLAST)

001: MAATNTILAF SSPSRLLIPP SSNPSTLRSS FRGVSLNNNN LHRLQSVSFA VKAPSKALTV VSAAKKAVAV LKGTSDVEGV VTLTQDDSGP TTVNVRITGL
101: TPGPHGFHLH EFGDTTNGCI STGPHFNPNN MTHGAPEDEC RHAGDLGNIN ANADGVAETT IVDNQIPLTG PNSVVGRAFV VHELKDDLGK GGHELSLTTG
201: NAGGRLACGV IGLTPL

Arabidopsis Description

CSD2Superoxide dismutase [Cu-Zn] 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O78310]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.