Factsheet for VIT_06s0061g00750.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

extracellular: 23391302

msms PMID: 23391302 doi

B Delaunois, T Colby, N Belloy, A Conreux, A Harzen, F Baillieul, C Clément, J Schmidt, P Jeandet, S Cordelier

Université de Reims Champagne-Ardenne, UFR Sciences Exactes et Naturelles, Unité de Recherche Vigne et Vins de Champagne - EA 4707, Laboratoire de Stress, Défenses et Reproduction des Plantes, B,P, 1039, Reims, cedex 02, 51687, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH25109	Soybean	plastid	68.4	71.08
TraesCS7A01G292100.1	Wheat	plastid	66.04	69.65
TraesCS7B01G197300.1	Wheat	golgi	65.57	69.15
TraesCS7D01G290700.2	Wheat	plastid	65.57	68.81
KRH30559	Soybean	plastid	67.45	68.42
KRH26536	Soybean	plastid	58.96	68.31
Zm00001d031908_P001	Maize	plastid	65.57	67.48
EES15166	Sorghum	plastid	65.57	67.48
Os08t0561700-01	Rice	extracellular	66.51	66.82
Bra034394.1-P	Field mustard	plastid	64.62	66.18
PGSC0003DMT400001102	Potato	plastid	66.98	66.05
CDX77163	Canola	plastid	63.21	66.01
CDY30502	Canola	plastid	64.62	65.87
Solyc11g066390.1.1	Tomato	extracellular, plastid	66.98	65.44
GSMUA_Achr10P...	Banana	plastid	66.04	64.81
AT2G28190.1	Thale cress	plastid	65.57	64.35
GSMUA_Achr9P20410_001	Banana	plastid	64.15	59.39
VIT_14s0030g00950.t01	Wine grape	cytosol	40.57	59.31
VIT_14s0030g00830.t01	Wine grape	cytosol	41.51	58.28
VIT_08s0007g07280.t01	Wine grape	cytosol, mitochondrion	41.51	56.41
HORVU7Hr1G060130.2	Barley	plastid, vacuole	67.45	55.86
Bra011971.1-P	Field mustard	plastid	50.0	52.22
VIT_14s0036g01320.t01	Wine grape	cytosol	18.87	50.63

Protein Annotations

MapMan:10.2.2.3	EntrezGene:100233100	wikigene:100233100	Gene3D:2.60.40.200	ProteinID:AAC14128	ProteinID:AAC14128.1
EMBL:AF056622	ProteinID:AFU52880	ProteinID:AFU52880.1	EMBL:AM443772	ProteinID:CAN59834	ProteinID:CAN59834.1
ProteinID:CBI17131	ProteinID:CBI17131.3	UniProt:D7SNA2	EMBL:FN594957	GO:GO:0003674	GO:GO:0003824
GO:GO:0004784	GO:GO:0005488	GO:GO:0005507	GO:GO:0005575	GO:GO:0005576	GO:GO:0005615
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006801	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016209
GO:GO:0016491	GO:GO:0019430	GO:GO:0046872	GO:GO:0055114	GO:GO:0098869	InterPro:IPR036423
EMBL:JQ692112	PFAM:PF00080	PRINTS:PR00068	ScanProsite:PS00087	ScanProsite:PS00332	PANTHER:PTHR10003
PANTHER:PTHR10003:SF34	InterPro:SOD-like_Cu/Zn_dom_sf	EntrezGene:SODCP	wikigene:SODCP	InterPro:SOD_Cu/Zn_/chaperone	InterPro:SOD_Cu/Zn_BS
InterPro:SOD_Cu_Zn_dom	SUPFAM:SSF49329	TIGR:TC69818	UniParc:UPI0001BE0F0C	ArrayExpress:VIT_06s0061g00750	EnsemblPlantsGene:VIT_06s0061g00750
EnsemblPlants:VIT_06s0061g00750.t01	unigene:Vvi.114	SEG:seg	:	:	:

Description

Superoxide dismutase [Cu-Zn] [Source:UniProtKB/TrEMBL;Acc:D7SNA2]

Coordinates

chr6:+:18276946..18280687

Molecular Weight (calculated)

21711.8 Da

IEP (calculated)

6.336

GRAVY (calculated)

-0.003

Length

212 amino acids

Sequence
(BLAST)

001: MAVNTLLSTA PSRVFLSFPN PSPNPSPQLH SQFHGLSLKL TRQSIPLATA PKPLSVVAVT KKAVAVLKGT SSVEGVVTLS QEDDGPTTVS VRITGLTPGN
101: HGFHLHEFGD TTNGCMSTGA HFNPNGMTHG APEDDVRHAG DLGNIVANAE GVAEATIVDT QIPLSGPNAV IGRALVVHEL EDDLGKGGHE LSLTTGNAGG
201: RLACGVVGLT PI

Best Arabidopsis Sequence Match ( AT2G28190.1 )
(BLAST)

001: MAATNTILAF SSPSRLLIPP SSNPSTLRSS FRGVSLNNNN LHRLQSVSFA VKAPSKALTV VSAAKKAVAV LKGTSDVEGV VTLTQDDSGP TTVNVRITGL
101: TPGPHGFHLH EFGDTTNGCI STGPHFNPNN MTHGAPEDEC RHAGDLGNIN ANADGVAETT IVDNQIPLTG PNSVVGRAFV VHELKDDLGK GGHELSLTTG
201: NAGGRLACGV IGLTPL

Arabidopsis Description

CSD2Superoxide dismutase [Cu-Zn] 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O78310]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.