Factsheet for Bra034394.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY30502	Canola	plastid	100.0	99.52
AT2G28190.1	Thale cress	plastid	76.81	73.61
KRH26536	Soybean	plastid	61.35	69.4
TraesCS7A01G292100.1	Wheat	plastid	66.18	68.16
TraesCS7D01G290700.2	Wheat	plastid	66.18	67.82
TraesCS7B01G197300.1	Wheat	golgi	65.7	67.66
Zm00001d031908_P001	Maize	plastid	66.67	66.99
EES15166	Sorghum	plastid	66.67	66.99
GSMUA_Achr10P...	Banana	plastid	69.08	66.2
PGSC0003DMT400001102	Potato	plastid	68.12	65.58
Os08t0561700-01	Rice	extracellular	66.67	65.4
Solyc11g066390.1.1	Tomato	extracellular, plastid	68.12	64.98
VIT_06s0061g00750.t01	Wine grape	extracellular, plastid	66.18	64.62
Bra031642.1-P	Field mustard	cytosol	46.86	63.82
GSMUA_Achr9P20410_001	Banana	plastid	64.25	58.08
Bra011971.1-P	Field mustard	plastid	56.52	57.64
HORVU7Hr1G060130.2	Barley	plastid, vacuole	67.63	54.69
Bra002133.1-P	Field mustard	cytosol	41.55	53.09

Protein Annotations

MapMan:10.2.2.3	Gene3D:2.60.40.200	EnsemblPlantsGene:Bra034394	EnsemblPlants:Bra034394.1	EnsemblPlants:Bra034394.1-P	GO:GO:0003674
GO:GO:0003824	GO:GO:0004784	GO:GO:0005488	GO:GO:0006801	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0019430	GO:GO:0046872	GO:GO:0055114
InterPro:IPR036423	UniProt:M4F001	PFAM:PF00080	PRINTS:PR00068	ScanProsite:PS00087	ScanProsite:PS00332
PANTHER:PTHR10003	PANTHER:PTHR10003:SF34	InterPro:SOD-like_Cu/Zn_dom_sf	InterPro:SOD_Cu/Zn_/chaperone	InterPro:SOD_Cu/Zn_BS	InterPro:SOD_Cu_Zn_dom
SUPFAM:SSF49329	UniParc:UPI0002543C5D	SEG:seg	:	:	:

Description

AT2G28190 (E=7e-082) CSD2, CZSOD2 | CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2); superoxide dismutase

Coordinates

chrA04:+:12313535..12314812

Molecular Weight (calculated)

21369.3 Da

IEP (calculated)

7.078

GRAVY (calculated)

-0.068

Length

207 amino acids

Sequence
(BLAST)

001: MASHTFLSFS SPPRLLVSPP STLRSPFVGV SLNLHRPQSV SFSASKKSLT VVSAAKKAVA VLKGNSDVEG VVTLTQDDSG PTKVSVRITG LTPGPHGFHL
101: HEFGDTTNGC ISTGPHFNPN NMTHGAPEDE IRHAGDLGNI IANADGVAET TLVDNQIPLT GPNSVVGRAF VVHELKDDLG KGGHELSLTT GNAGGRLACG
201: VVGLTPL

Best Arabidopsis Sequence Match ( AT2G28190.1 )
(BLAST)

001: MAATNTILAF SSPSRLLIPP SSNPSTLRSS FRGVSLNNNN LHRLQSVSFA VKAPSKALTV VSAAKKAVAV LKGTSDVEGV VTLTQDDSGP TTVNVRITGL
101: TPGPHGFHLH EFGDTTNGCI STGPHFNPNN MTHGAPEDEC RHAGDLGNIN ANADGVAETT IVDNQIPLTG PNSVVGRAFV VHELKDDLGK GGHELSLTTG
201: NAGGRLACGV IGLTPL

Arabidopsis Description

CSD2Superoxide dismutase [Cu-Zn] 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O78310]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.