CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 9
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
EpiLoc:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES15166	Sorghum	plastid	71.04	63.11
TraesCS7B01G197300.1	Wheat	golgi	68.85	62.69
TraesCS7A01G292100.1	Wheat	plastid	68.85	62.69
Zm00001d031908_P001	Maize	plastid	70.49	62.62
TraesCS7D01G290700.2	Wheat	plastid	68.85	62.38
Os08t0561700-01	Rice	extracellular	71.58	62.09
KRH25109	Soybean	plastid	68.85	61.76
Bra034394.1-P	Field mustard	plastid	69.4	61.35
CDY30502	Canola	plastid	69.4	61.06
CDX77163	Canola	plastid	67.21	60.59
KRG96907	Soybean	extracellular, plasma membrane	49.73	59.87
VIT_06s0061g00750.t01	Wine grape	extracellular, plastid	68.31	58.96
KRH30559	Soybean	plastid	67.21	58.85
KRH68647	Soybean	extracellular	48.63	58.55
AT2G28190.1	Thale cress	plastid	68.31	57.87
KRH08504	Soybean	cytosol	46.99	51.5
HORVU7Hr1G060130.2	Barley	plastid, vacuole	69.4	49.61
Bra011971.1-P	Field mustard	plastid	51.91	46.8

Protein Annotations

MapMan:10.2.2.3	Gene3D:2.60.40.200	EMBL:ACUP02007718	EnsemblPlantsGene:GLYMA_12G178800	GO:GO:0003674	GO:GO:0003824
GO:GO:0004784	GO:GO:0005488	GO:GO:0005507	GO:GO:0005575	GO:GO:0005576	GO:GO:0005615
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006412	GO:GO:0006801	GO:GO:0006950
GO:GO:0006979	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009507
GO:GO:0009536	GO:GO:0009570	GO:GO:0009579	GO:GO:0009628	GO:GO:0009987	GO:GO:0010039
GO:GO:0016491	GO:GO:0019430	GO:GO:0019538	GO:GO:0034599	GO:GO:0035195	GO:GO:0040029
GO:GO:0046688	GO:GO:0046872	GO:GO:0048046	GO:GO:0055114	GO:GO:0071329	GO:GO:0071457
GO:GO:0071472	GO:GO:0071484	GO:GO:0071493	UniProt:I1LTN6	InterPro:IPR036423	EnsemblPlants:KRH26536
ProteinID:KRH26536	ProteinID:KRH26536.1	PFAM:PF00080	PRINTS:PR00068	ScanProsite:PS00087	ScanProsite:PS00332
PANTHER:PTHR10003	PANTHER:PTHR10003:SF34	MetaCyc:PWY-6854	InterPro:SOD-like_Cu/Zn_dom_sf	InterPro:SOD_Cu/Zn_/chaperone	InterPro:SOD_Cu/Zn_BS
InterPro:SOD_Cu_Zn_dom	SUPFAM:SSF49329	UniParc:UPI00023D05D6	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr12:+:33851671..33854688

Molecular Weight (calculated)

18627.2 Da

IEP (calculated)

6.794

GRAVY (calculated)

0.033

Length

183 amino acids

Sequence
(BLAST)

001: MQAAIAAMAA HTILFSSFPA PQSIALPATT KKAVAILKGN SSVHGLVTLT QQQDNGPTTV TVRVSGLTPG PHGFHLHEFG DITNGCISTG PHFNPNKLKH
101: GAPEDKIRHA GDLGNIVANA DGVAEATTVD NQIPLIGPNS VVGRALVVHE LEDDLGKGGQ ELSLSTGNAG GRLACGVVGL SPV

Best Arabidopsis Sequence Match ( AT1G08830.1 )
(BLAST)

001: MAKGVAVLNS SEGVTGTIFF TQEGDGVTTV SGTVSGLKPG LHGFHVHALG DTTNGCMSTG PHFNPDGKTH GAPEDANRHA GDLGNITVGD DGTATFTITD
101: CQIPLTGPNS IVGRAVVVHA DPDDLGKGGH ELSLATGNAG GRVACGIIGL QG

Arabidopsis Description

CSD1Superoxide dismutase [Cu-Zn] 1 [Source:UniProtKB/Swiss-Prot;Acc:P24704]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.