Factsheet for VIT_08s0007g07280.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 1
plastid 2
cytosol 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_02s0025g04830.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G18100.1	VIT_02s0025g04830.t01	AT1G12520.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g062890.2.1	Tomato	cytosol	80.13	80.13
PGSC0003DMT400059417	Potato	cytosol	80.77	76.36
Os03t0219200-01	Rice	extracellular	73.72	70.99
GSMUA_Achr4P06850_001	Banana	cytoskeleton, cytosol, plastid	72.44	70.62
EER95258	Sorghum	cytosol	73.72	70.55
KRH08504	Soybean	cytosol	75.0	70.06
CDY25459	Canola	cytosol	72.44	69.33
Bra002133.1-P	Field mustard	cytosol	69.87	67.28
CDY38486	Canola	cytosol	69.23	66.67
TraesCS4D01G242800.2	Wheat	cytosol	69.87	66.46
AT5G18100.1	Thale cress	peroxisome	69.23	65.85
VIT_14s0030g00950.t01	Wine grape	cytosol	60.26	64.83
VIT_14s0030g00830.t01	Wine grape	cytosol	60.26	62.25
TraesCS4B01G243200.2	Wheat	cytosol	67.95	60.92
VIT_14s0036g01320.t01	Wine grape	cytosol	29.49	58.23
HORVU4Hr1G067390.2	Barley	cytosol	68.59	58.15
TraesCS4A01G065800.2	Wheat	unclear	68.59	50.47
Zm00001d028232_P012	Maize	cytosol	55.13	45.74
VIT_06s0061g00750.t01	Wine grape	extracellular, plastid	56.41	41.51

Protein Annotations

MapMan:10.2.2.3	EntrezGene:100260705	wikigene:100260705	Gene3D:2.60.40.200	ProteinID:CBI29950	ProteinID:CBI29950.3
UniProt:D7TI74	EMBL:FN595991	GO:GO:0003674	GO:GO:0003824	GO:GO:0004784	GO:GO:0005488
GO:GO:0005507	GO:GO:0005575	GO:GO:0005576	GO:GO:0005615	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005773	GO:GO:0005777	GO:GO:0006801	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009628	GO:GO:0009987	GO:GO:0016491	GO:GO:0019430
GO:GO:0046872	GO:GO:0055114	GO:GO:0071457	GO:GO:0071472	GO:GO:0071484	GO:GO:0071486
GO:GO:0071493	InterPro:IPR036423	EntrezGene:LOC100260705	wikigene:LOC100260705	PFAM:PF00080	PRINTS:PR00068
ScanProsite:PS00087	ScanProsite:PS00332	PANTHER:PTHR10003	PANTHER:PTHR10003:SF31	InterPro:SOD-like_Cu/Zn_dom_sf	InterPro:SOD_Cu/Zn_/chaperone
InterPro:SOD_Cu/Zn_BS	InterPro:SOD_Cu_Zn_dom	SUPFAM:SSF49329	TIGR:TC60250	UniParc:UPI0001983EDC	ArrayExpress:VIT_08s0007g07280
EnsemblPlantsGene:VIT_08s0007g07280	EnsemblPlants:VIT_08s0007g07280.t01	unigene:Vvi.2574	RefSeq:XP_002281571	RefSeq:XP_002281571.1	:

Description

Superoxide dismutase [Cu-Zn] [Source:UniProtKB/TrEMBL;Acc:D7TI74]

Coordinates

chr8:+:20888649..20892112

Molecular Weight (calculated)

15787.8 Da

IEP (calculated)

7.824

GRAVY (calculated)

-0.164

Length

156 amino acids

Sequence
(BLAST)

001: MGSVKAVAVI AGNANVRGSL HFIQDPAGST HVKGRITGLT PGLHGFHIHA LGDTTNGCMS TGPHFNPLKK DHGAPTDKER HAGDLGNIVA GPDGVAEVSI
101: KDMQISLSGQ HSILGRAVVV HADPDDLGRG GHELSKTTGN AGGRVGCGII GLQSSA

Best Arabidopsis Sequence Match ( AT5G18100.1 )
(BLAST)

001: MEAPRGNLRA VALIAGDNNV RGCLQFVQDI SGTTHVTGKI SGLSPGFHGF HIHSFGDTTN GCISTGPHFN PLNRVHGPPN EEERHAGDLG NILAGSNGVA
101: EILIKDKHIP LSGQYSILGR AVVVHADPDD LGKGGHKLSK STGNAGSRVG CGIIGLQSSA DAKL

Arabidopsis Description

CSD3Superoxide dismutase [Cu-Zn] 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FK60]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.