Factsheet for PGSC0003DMT400059417

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 2
cytosol 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400009994

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G18100.1	PGSC0003DMT400009994	AT1G12520.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g062890.2.1	Tomato	cytosol	92.73	98.08
VIT_08s0007g07280.t01	Wine grape	cytosol, mitochondrion	76.36	80.77
GSMUA_Achr4P06850_001	Banana	cytoskeleton, cytosol, plastid	72.12	74.38
KRH08504	Soybean	cytosol	73.94	73.05
Os03t0219200-01	Rice	extracellular	69.7	70.99
CDY25459	Canola	cytosol	68.48	69.33
Bra002133.1-P	Field mustard	cytosol	67.88	69.14
EER95258	Sorghum	cytosol	67.88	68.71
CDY38486	Canola	cytosol	67.27	68.52
AT5G18100.1	Thale cress	peroxisome	66.67	67.07
TraesCS4D01G242800.2	Wheat	cytosol	65.45	65.85
PGSC0003DMT400027651	Potato	cytosol	59.39	64.47
TraesCS4B01G243200.2	Wheat	cytosol	66.06	62.64
HORVU4Hr1G067390.2	Barley	cytosol	66.06	59.24
TraesCS4A01G065800.2	Wheat	unclear	64.85	50.47
Zm00001d028232_P012	Maize	cytosol	49.7	43.62
PGSC0003DMT400001102	Potato	plastid	55.15	42.33

Protein Annotations

MapMan:10.2.2.3	EntrezGene:102604743	Gene3D:2.60.40.200	GO:GO:0003674	GO:GO:0003824	GO:GO:0004784
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773
GO:GO:0005777	GO:GO:0006801	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009628
GO:GO:0009987	GO:GO:0016491	GO:GO:0019430	GO:GO:0046872	GO:GO:0055114	GO:GO:0071457
GO:GO:0071472	GO:GO:0071484	GO:GO:0071486	GO:GO:0071493	InterPro:IPR036423	UniProt:M1C485
PFAM:PF00080	EnsemblPlantsGene:PGSC0003DMG400023086	PGSC:PGSC0003DMG400023086	EnsemblPlants:PGSC0003DMT400059417	PRINTS:PR00068	ScanProsite:PS00087
ScanProsite:PS00332	PANTHER:PTHR10003	PANTHER:PTHR10003:SF31	InterPro:SOD-like_Cu/Zn_dom_sf	InterPro:SOD_Cu/Zn_/chaperone	InterPro:SOD_Cu/Zn_BS
InterPro:SOD_Cu_Zn_dom	SUPFAM:SSF49329	UniParc:UPI00029555D5	RefSeq:XP_006349575.1	:	:

Description

Superoxide dismutase [Cu-Zn] [Source:PGSC_GENE;Acc:PGSC0003DMG400023086]

Coordinates

chr3:-:13287247..13292137

Molecular Weight (calculated)

16834.1 Da

IEP (calculated)

7.369

GRAVY (calculated)

-0.135

Length

165 amino acids

Sequence
(BLAST)

001: MEKDVGKKSM GNLKAVAVIS GNDSVKGSLQ FIQQSNGGTH VRGRIIGLAP GLHAFHIHAL GDTTNGCNST GPHFNPLKKD HGAPMDEVRH AGDLGNIVAG
101: PDGVAEISIS DMQIPLSGVH SILGRAVVVH ADPDDLGRGG HELSKTTGNA GARVGCGVIG LQSSV

Best Arabidopsis Sequence Match ( AT5G18100.1 )
(BLAST)

001: MEAPRGNLRA VALIAGDNNV RGCLQFVQDI SGTTHVTGKI SGLSPGFHGF HIHSFGDTTN GCISTGPHFN PLNRVHGPPN EEERHAGDLG NILAGSNGVA
101: EILIKDKHIP LSGQYSILGR AVVVHADPDD LGKGGHKLSK STGNAGSRVG CGIIGLQSSA DAKL

Arabidopsis Description

CSD3Superoxide dismutase [Cu-Zn] 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FK60]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.