Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- plastid 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g067740.2.1 | Tomato | extracellular | 98.68 | 98.68 |
| OQU92597 | Sorghum | cytosol | 84.87 | 84.87 |
| VIT_14s0030g00950.t01 | Wine grape | cytosol | 80.92 | 84.83 |
| AT1G08830.1 | Thale cress | cytosol | 84.21 | 84.21 |
| CDX93533 | Canola | cytosol | 82.89 | 82.89 |
| Bra031642.1-P | Field mustard | cytosol | 82.24 | 82.24 |
| Os03t0351500-01 | Rice | extracellular | 82.24 | 82.24 |
| KRH68647 | Soybean | extracellular | 82.24 | 82.24 |
| CDX95028 | Canola | cytosol | 82.24 | 82.24 |
| CDY06331 | Canola | cytosol | 82.24 | 82.24 |
| KRG96907 | Soybean | extracellular, plasma membrane | 81.58 | 81.58 |
| VIT_14s0030g00830.t01 | Wine grape | cytosol | 80.26 | 80.79 |
| TraesCS2D01G123300.1 | Wheat | extracellular, golgi, unclear | 78.29 | 78.29 |
| TraesCS2A01G121200.1 | Wheat | golgi, unclear | 78.95 | 76.43 |
| KXG36882 | Sorghum | cytosol | 82.89 | 75.9 |
| HORVU5Hr1G066230.1 | Barley | cytosol | 63.16 | 66.67 |
| HORVU5Hr1G066930.1 | Barley | cytosol | 62.5 | 65.97 |
| VIT_14s0036g01320.t01 | Wine grape | cytosol | 33.55 | 64.56 |
| CDY22663 | Canola | plastid | 78.29 | 62.63 |
| PGSC0003DMT400059417 | Potato | cytosol | 64.47 | 59.39 |
| Zm00001d047479_P002 | Maize | cytosol | 71.05 | 57.75 |
| GSMUA_Achr8P09910_001 | Banana | cytosol, peroxisome, plastid | 48.68 | 50.0 |
| HORVU2Hr1G021110.3 | Barley | plastid | 51.32 | 48.75 |
| Zm00001d029170_P004 | Maize | cytosol | 72.37 | 47.41 |
| Zm00001d022505_P002 | Maize | cytosol | 78.95 | 46.51 |
| PGSC0003DMT400001102 | Potato | plastid | 62.5 | 44.19 |
Protein Annotations
| MapMan:10.2.2.3 | Gene3D:2.60.40.200 | ProteinID:AAK26435 | ProteinID:AAK26435.1 | ProteinID:AAK38603 | ProteinID:AAK38603.1 |
| ProteinID:ABK54292 | ProteinID:ABK54292.1 | ProteinID:AEK65119 | ProteinID:AEK65119.1 | EMBL:AF354748 | EMBL:AF355460 |
| EMBL:EF057489 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004784 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0006412 |
| GO:GO:0006801 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009605 |
| GO:GO:0009607 | GO:GO:0009628 | GO:GO:0009651 | GO:GO:0009987 | GO:GO:0010039 | GO:GO:0010193 |
| GO:GO:0016491 | GO:GO:0019430 | GO:GO:0019538 | GO:GO:0034599 | GO:GO:0035195 | GO:GO:0040029 |
| GO:GO:0042742 | GO:GO:0046688 | GO:GO:0046872 | GO:GO:0055114 | GO:GO:0071280 | GO:GO:0071329 |
| GO:GO:0071457 | GO:GO:0071472 | GO:GO:0071484 | GO:GO:0071493 | InterPro:IPR036423 | EMBL:JN108033 |
| UniProt:M1AQ00 | PFAM:PF00080 | EnsemblPlantsGene:PGSC0003DMG400010660 | PGSC:PGSC0003DMG400010660 | EnsemblPlants:PGSC0003DMT400027651 | PRINTS:PR00068 |
| ScanProsite:PS00087 | ScanProsite:PS00332 | PANTHER:PTHR10003 | PANTHER:PTHR10003:SF34 | InterPro:SOD-like_Cu/Zn_dom_sf | InterPro:SOD_Cu/Zn_/chaperone |
| InterPro:SOD_Cu/Zn_BS | InterPro:SOD_Cu_Zn_dom | SUPFAM:SSF49329 | UniParc:UPI000295C55E | : | : |
Description
Superoxide dismutase [Cu-Zn] 2 [Source:PGSC_GENE;Acc:PGSC0003DMG400010660]
Coordinates
chr1:+:59472882..59478334
Molecular Weight (calculated)
15275.8 Da
IEP (calculated)
5.407
GRAVY (calculated)
-0.191
Length
152 amino acids
Sequence
(BLAST)
(BLAST)
001: MVKAVAVLNS SEGVSGTILF TQDGDAPTTV NGNISGLKPG LHGFHVHALG DTTNGCMSTG PHYNPAGKEH GAPEDEVRHA GDLGNITVGE DGTASFTITD
101: QQIPLTGSQS IIGRAVVVHA DPDDLGKGGH ELSKSTGNAG GRIACGIIGL QG
101: QQIPLTGSQS IIGRAVVVHA DPDDLGKGGH ELSKSTGNAG GRIACGIIGL QG
001: MAKGVAVLNS SEGVTGTIFF TQEGDGVTTV SGTVSGLKPG LHGFHVHALG DTTNGCMSTG PHFNPDGKTH GAPEDANRHA GDLGNITVGD DGTATFTITD
101: CQIPLTGPNS IVGRAVVVHA DPDDLGKGGH ELSLATGNAG GRVACGIIGL QG
101: CQIPLTGPNS IVGRAVVVHA DPDDLGKGGH ELSLATGNAG GRVACGIIGL QG
Arabidopsis Description
CSD1Superoxide dismutase [Cu-Zn] 1 [Source:UniProtKB/Swiss-Prot;Acc:P24704]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.