Factsheet for Solyc01g067740.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	secretory
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	plastid

extracellular: 20496099
extracellular: 22364583
extracellular: 22892874
plastid: 26371478
extracellular: 26583031
extracellular: 29876421

msms PMID: 20496099 doi

D Dahal, A Pich, HP Braun, K Wydra

Institute for Plant Diseases and Plant Protection, Faculty of Natural Sciences, Leibniz Universität Hannover, Herrenhäuser Str.2, 30419 Hannover, Germany. dahal@ipp.uni-hannover.de

msms PMID: 22892874 doi

EH Konozy, H Rogniaux, M Causse, M Faurobert

Unité de Génétique et Amélioration des Fruits et Légumes, INRA, BP 94, 84143 Montfavet, France. ehkonozy@yahoo.com

msms PMID: 26583031 doi

F Gawehns, L Ma, O Bruning, PM Houterman, S Boeren, BJ Cornelissen, M Rep, FL Takken

Laboratory of Biochemistry, Wageningen University Wageningen, Netherlands., Molecular Plant Pathology, Faculty of Science, Swammerdam Institute for Life Sciences, University of Amsterdam Amsterdam, Netherlands., RNA Biology and Applied Bioinformatics Research Group and MAD: Dutch Genomics Service and Support Provider, Faculty of Science, Swammerdam Institute for Life Sciences, University of Amsterdam Amsterdam, Netherlands.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400027651	Potato	cytosol	98.68	98.68
OQU92597	Sorghum	cytosol	85.53	85.53
AT1G08830.1	Thale cress	cytosol	84.87	84.87
VIT_14s0030g00950.t01	Wine grape	cytosol	80.26	84.14
CDX93533	Canola	cytosol	83.55	83.55
Bra031642.1-P	Field mustard	cytosol	82.89	82.89
Os03t0351500-01	Rice	extracellular	82.89	82.89
KRH68647	Soybean	extracellular	82.89	82.89
CDY06331	Canola	cytosol	82.89	82.89
CDX95028	Canola	cytosol	82.89	82.89
KRG96907	Soybean	extracellular, plasma membrane	82.24	82.24
VIT_14s0030g00830.t01	Wine grape	cytosol	80.26	80.79
TraesCS2D01G123300.1	Wheat	extracellular, golgi, unclear	78.95	78.95
TraesCS2A01G121200.1	Wheat	golgi, unclear	79.61	77.07
KXG36882	Sorghum	cytosol	83.55	76.51
HORVU5Hr1G066230.1	Barley	cytosol	63.82	67.36
HORVU5Hr1G066930.1	Barley	cytosol	63.16	66.67
VIT_14s0036g01320.t01	Wine grape	cytosol	33.55	64.56
CDY22663	Canola	plastid	78.95	63.16
Solyc03g062890.2.1	Tomato	cytosol	63.82	62.18
Zm00001d047479_P002	Maize	cytosol	71.71	58.29
GSMUA_Achr8P09910_001	Banana	cytosol, peroxisome, plastid	48.68	50.0
HORVU2Hr1G021110.3	Barley	plastid	51.97	49.38
Zm00001d029170_P004	Maize	cytosol	73.03	47.84
Zm00001d022505_P002	Maize	cytosol	79.61	46.9
Solyc11g066390.1.1	Tomato	extracellular, plastid	63.82	44.7

Protein Annotations

MapMan:10.2.2.3	Gene3D:2.60.40.200	GO:GO:0003674	GO:GO:0003824	GO:GO:0004784	GO:GO:0005488
GO:GO:0005507	GO:GO:0005575	GO:GO:0005576	GO:GO:0005615	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0005829	GO:GO:0006412	GO:GO:0006801	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009605	GO:GO:0009607
GO:GO:0009628	GO:GO:0009651	GO:GO:0009987	GO:GO:0010039	GO:GO:0010193	GO:GO:0016209
GO:GO:0016491	GO:GO:0019430	GO:GO:0019538	GO:GO:0034599	GO:GO:0035195	GO:GO:0040029
GO:GO:0042742	GO:GO:0046688	GO:GO:0046872	GO:GO:0055114	GO:GO:0071280	GO:GO:0071329
GO:GO:0071457	GO:GO:0071472	GO:GO:0071484	GO:GO:0071493	GO:GO:0098869	InterPro:IPR036423
UniProt:K4AX22	PFAM:PF00080	PRINTS:PR00068	ScanProsite:PS00087	ScanProsite:PS00332	PANTHER:PTHR10003
PANTHER:PTHR10003:SF34	InterPro:SOD-like_Cu/Zn_dom_sf	InterPro:SOD_Cu/Zn_/chaperone	InterPro:SOD_Cu/Zn_BS	InterPro:SOD_Cu_Zn_dom	SUPFAM:SSF49329
EnsemblPlantsGene:Solyc01g067740.2	EnsemblPlants:Solyc01g067740.2.1	UniParc:UPI000160B6DF	:	:	:

Description

Superoxide dismutase [Cu-Zn] [Source:UniProtKB/TrEMBL;Acc:K4AX22]

Coordinates

chr1:+:76683503..76688431

Molecular Weight (calculated)

15285.9 Da

IEP (calculated)

5.771

GRAVY (calculated)

-0.199

Length

152 amino acids

Sequence
(BLAST)

001: MVKAVAVLNS SEGVSGTILF TQDGDAPTTV NGNISGLKPG LHGFHVHALG DTTNGCMSTG PHYNPAGKEH GAPEDEVRHA GDLGNITVGE DGTASFTITD
101: KQIPLTGPQS IIGRAVVVHA DPDDLGKGGH ELSKSTGNAG GRIACGIIGL QG

Best Arabidopsis Sequence Match ( AT1G08830.2 )
(BLAST)

001: MAKGVAVLNS SEGVTGTIFF TQEGDGVTTV SGTVSGLKPG LHGFHVHALG DTTNGCMSTG PHFNPDGKTH GAPEDANRHA GDLGNITVGD DGTATFTITD
101: CQIPLTGPNS IVGRAVVVHA DPDDLGKGGH ELSLATGNAG GRVACGIIGL QG

Arabidopsis Description

CSD1Superoxide dismutase [Cu-Zn] 1 [Source:UniProtKB/Swiss-Prot;Acc:P24704]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.