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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • extracellular 3
  • endoplasmic reticulum 2
  • vacuole 2
  • plasma membrane 2
  • golgi 2
  • cytosol 2
  • plastid 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:extracellular
Any Predictor:cytosol, peroxisome, plastid, secretory
BaCelLo:secretory
EpiLoc:extracellular
MultiLoc:cytosol
Plant-mPloc:plastid
PProwler:secretory
WoLF PSORT:cytosol
YLoc:peroxisome
mitochondrion: 15069638
extracellular: 18372294
mitochondrion: 19217306
extracellular: 23159799
extracellular: 24083427
extracellular: 25047395
extracellular: 26072143
plasma membrane: 27800704
plastid: 27992503
extracellular: 28232208
msms PMID: 26072143 doi
B Du, Z Wei, Z Wang, X Wang, X Peng, B Du, R Chen, L Zhu, G He
State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan, 430072, China., State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan, 430072, China. Electronic address: gche@whu.edu.cn.
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID: 25047395 doi
JY Kim, J Wu, SJ Kwon, H Oh, SE Lee, SG Kim, Y Wang, GK Agrawal, R Rakwal, KY Kang, IP Ahn, BG Kim, ST Kim
Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang, South Korea.
msms PMID: 15069638 doi
N Tanaka, M Fujita, H Handa, S Murayama, M Uemura, Y Kawamura, T Mitsui, S Mikami, Y Tozawa, T Yoshinaga, S Komatsu
Department of Molecular Genetics, National Institute of Agrobiological Sciences, 305-8602, Tsukuba, Japan.
msms PMID: 23159799 doi
SG Kim, Y Wang, KH Lee, ZY Park, J Park, J Wu, SJ Kwon, YH Lee, GK Agrawal, R Rakwal, ST Kim, KY Kang
Plant Molecular Biology and Biotechnology Research Center, Gyeongsang National University, Jinju, 660-701, South Korea.
msms PMID: 27992503 doi
S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
msms PMID: 24083427 doi
T Shinano, T Yoshimura, T Watanabe, Y Unno, M Osaki, Y Nanjo, S Komatsu
Agricultural Radiation Research Center, NARO Tohoku Agricultural Research Center , 50, Harajyukuminami, Arai, Fukushima 960-2156, Japan.
msms PMID: 18372294 doi
T Aki, M Shigyo, R Nakano, T Yoneyama, S Yanagisawa
Department of Applied Biological Chemistry, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Tokyo, 113-8657 Japan.
msms PMID: 19217306 doi
X Chen, Y Wang, J Li, A Jiang, Y Cheng, W Zhang
Department of Biochemistry and Molecular Biology, Nanjing Agricultural University, Weigang, China.
msms PMID: 28232208 doi
Y Wang, R Gupta, W Song, HH Huh, SE Lee, J Wu, GK Agrawal, R Rakwal, KY Kang, SR Park, ST Kim
Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea., Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea. Electronic address: stkim71@pusan.ac.kr., Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju, South Korea., National Academy of Agricultural Science, Rural Development Administration, Suwon 441-707, South Korea. Electronic address: srpark@korea.kr., Plant Proteomics Group, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal; Faculty of Health and Sport Sciences, Tsukuba International Academy for Sport Studies (TIAS), University of Tsukuba, 1-1-1 Tennodai, Tsukuba, 305-8574, Ibaraki, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
OQU92597 Sorghum cytosol 92.76 92.76
GSMUA_Achr2P02380_001 Banana cytosol 86.84 86.84
GSMUA_Achr7P03680_001 Banana plasma membrane 84.87 84.87
VIT_14s0030g00950.t01 Wine grape cytosol 80.26 84.14
KRH68647 Soybean extracellular 83.55 83.55
Solyc01g067740.2.1 Tomato extracellular 82.89 82.89
PGSC0003DMT400027651 Potato cytosol 82.24 82.24
KRG96907 Soybean extracellular, plasma membrane 81.58 81.58
VIT_14s0030g00830.t01 Wine grape cytosol 79.61 80.13
AT1G08830.1 Thale cress cytosol 79.61 79.61
CDX93533 Canola cytosol 79.61 79.61
Bra031642.1-P Field mustard cytosol 78.95 78.95
CDY06331 Canola cytosol 78.95 78.95
CDX95028 Canola cytosol 78.95 78.95
VIT_14s0036g01320.t01 Wine grape cytosol 33.55 64.56
Zm00001d047479_P002 Maize cytosol 78.29 63.64
CDY22663 Canola plastid 75.66 60.53
Os03t0219200-01 Rice extracellular 61.18 57.41
Zm00001d029170_P004 Maize cytosol 79.61 52.16
Os08t0561700-01 Rice extracellular 61.84 44.55
Protein Annotations
MapMan:10.2.2.3Gene3D:2.60.40.200EntrezGene:4332846ProteinID:AAC14464.1ProteinID:ABF95937.1ProteinID:BAF12032.1
ProteinID:BAS84200.1EMBL:D00999ProteinID:EAZ26916.1GO:GO:0003674GO:GO:0003824GO:GO:0004784
GO:GO:0005488GO:GO:0005507GO:GO:0005575GO:GO:0005576GO:GO:0005615GO:GO:0005622
GO:GO:0005623GO:GO:0005737GO:GO:0006801GO:GO:0006950GO:GO:0008150GO:GO:0008152
GO:GO:0008270GO:GO:0009987GO:GO:0016209GO:GO:0016491GO:GO:0019430GO:GO:0046872
GO:GO:0055114GO:GO:0098869InterPro:IPR036423EMBL:L36320EnsemblPlantsGene:Os03g0351500EnsemblPlants:Os03t0351500-01
PFAM:PF00080PRINTS:PR00068ScanProsite:PS00087ScanProsite:PS00332PANTHER:PTHR10003PANTHER:PTHR10003:SF34
UniProt:Q0DRV6InterPro:SOD-like_Cu/Zn_dom_sfInterPro:SOD_Cu/Zn_/chaperoneInterPro:SOD_Cu/Zn_BSInterPro:SOD_Cu_Zn_domSUPFAM:SSF49329
UniParc:UPI000016DECCRefSeq:XP_015632608.1RefSeq:XP_015632609.1:::
Description
CYTOSOLIC SUPEROXIDASE DISMUTASESimilar to Superoxide dismutase. (Os03t0351500-01)
Coordinates
chr3:+:13181396..13184453
Molecular Weight (calculated)
15251.9 Da
IEP (calculated)
6.153
GRAVY (calculated)
-0.134
Length
152 amino acids
Sequence
(BLAST)
001: MVKAVVVLGS SEIVKGTIHF VQEGDGPTTV TGSVSGLKPG LHGFHIHALG DTTNGCMSTG PHYNPAGKEH GAPEDETRHA GDLGNVTAGE DGVANIHVVD
101: SQIPLTGPNS IIGRAVVVHA DPDDLGKGGH ELSKTTGNAG GRVACGIIGL QG
Best Arabidopsis Sequence Match ( AT1G08830.2 )
(BLAST)
001: MAKGVAVLNS SEGVTGTIFF TQEGDGVTTV SGTVSGLKPG LHGFHVHALG DTTNGCMSTG PHFNPDGKTH GAPEDANRHA GDLGNITVGD DGTATFTITD
101: CQIPLTGPNS IVGRAVVVHA DPDDLGKGGH ELSLATGNAG GRVACGIIGL QG
Arabidopsis Description
CSD1Superoxide dismutase [Cu-Zn] 1 [Source:UniProtKB/Swiss-Prot;Acc:P24704]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.