Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU92597 | Sorghum | cytosol | 56.03 | 85.53 |
| Os03t0351500-01 | Rice | extracellular | 52.16 | 79.61 |
| Zm00001d047479_P002 | Maize | cytosol | 60.78 | 75.4 |
| VIT_14s0030g00950.t01 | Wine grape | cytosol | 45.69 | 73.1 |
| Solyc01g067740.2.1 | Tomato | extracellular | 47.84 | 73.03 |
| GSMUA_Achr2P02380_001 | Banana | cytosol | 47.84 | 73.03 |
| GSMUA_Achr7P03680_001 | Banana | plasma membrane | 47.84 | 73.03 |
| KRG96907 | Soybean | extracellular, plasma membrane | 47.84 | 73.03 |
| KRH68647 | Soybean | extracellular | 47.41 | 72.37 |
| PGSC0003DMT400027651 | Potato | cytosol | 47.41 | 72.37 |
| AT1G08830.1 | Thale cress | cytosol | 46.98 | 71.71 |
| CDX93533 | Canola | cytosol | 46.98 | 71.71 |
| Bra031642.1-P | Field mustard | cytosol | 46.55 | 71.05 |
| CDY06331 | Canola | cytosol | 46.55 | 71.05 |
| CDX95028 | Canola | cytosol | 46.55 | 71.05 |
| VIT_14s0030g00830.t01 | Wine grape | cytosol | 45.26 | 69.54 |
| VIT_14s0036g01320.t01 | Wine grape | cytosol | 21.55 | 63.29 |
| CDY22663 | Canola | plastid | 45.26 | 55.26 |
| Zm00001d022505_P002 | Maize | cytosol | 50.0 | 44.96 |
| Zm00001d031908_P001 | Maize | plastid | 36.21 | 40.78 |
| Zm00001d028232_P012 | Maize | cytosol | 30.17 | 37.23 |
Protein Annotations
| MapMan:10.2.2.3 | Gene3D:2.60.40.200 | EntrezGene:542722 | UniProt:A0A1D6K364 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004784 | GO:GO:0005488 | GO:GO:0006801 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0019430 | GO:GO:0046872 | GO:GO:0055114 | InterPro:IPR036423 | ProteinID:ONL98099.1 |
| PFAM:PF00080 | PRINTS:PR00068 | ScanProsite:PS00087 | PANTHER:PTHR10003 | PANTHER:PTHR10003:SF34 | InterPro:SOD-like_Cu/Zn_dom_sf |
| InterPro:SOD_Cu/Zn_/chaperone | InterPro:SOD_Cu/Zn_BS | InterPro:SOD_Cu_Zn_dom | SUPFAM:SSF49329 | UniParc:UPI0008459521 | EnsemblPlantsGene:Zm00001d029170 |
| EnsemblPlants:Zm00001d029170_P004 | EnsemblPlants:Zm00001d029170_T004 | : | : | : | : |
Description
superoxide dismutase4Superoxide dismutase
Coordinates
chr1:+:60930917..60934137
Molecular Weight (calculated)
25089.8 Da
IEP (calculated)
7.069
GRAVY (calculated)
-0.235
Length
232 amino acids
Sequence
(BLAST)
(BLAST)
001: MVKAVAVLGS SDGVKGTIFF TQEGDGPTTV TGSVSGLKPG LHGFHVHALG DTTNGCMSTG PHYNPASKEH GAPEDENRHA GDLGNVTAGA DGVANINVTD
101: SQIPLTGPNS IIGRAVVVHA DPDDLGKDSL IITIYRSVIL SDYSMAEREK IWWTRAQEEH RKRWRPCCLW YDHPFPSPIL LRQTSFLFFF HTPRGFFIAL
201: YLPPQGSSDS RAELKQMVVG LRGRLGVPSP AG
101: SQIPLTGPNS IIGRAVVVHA DPDDLGKDSL IITIYRSVIL SDYSMAEREK IWWTRAQEEH RKRWRPCCLW YDHPFPSPIL LRQTSFLFFF HTPRGFFIAL
201: YLPPQGSSDS RAELKQMVVG LRGRLGVPSP AG
001: MAKGVAVLNS SEGVTGTIFF TQEGDGVTTV SGTVSGLKPG LHGFHVHALG DTTNGCMSTG PHFNPDGKTH GAPEDANRHA GDLGNITVGD DGTATFTITD
101: CQIPLTGPNS IVGRAVVVHA DPDDLGKGGH ELSLATGNAG GRVACGIIGL QG
101: CQIPLTGPNS IVGRAVVVHA DPDDLGKGGH ELSLATGNAG GRVACGIIGL QG
Arabidopsis Description
CSD1Superoxide dismutase [Cu-Zn] 1 [Source:UniProtKB/Swiss-Prot;Acc:P24704]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.