Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU5Hr1G066230.1 | Barley | cytosol | 95.14 | 95.14 |
| TraesCS2D01G123300.1 | Wheat | extracellular, golgi, unclear | 85.42 | 80.92 |
| TraesCS2A01G121200.1 | Wheat | golgi, unclear | 82.64 | 75.8 |
| GSMUA_Achr2P02380_001 | Banana | cytosol | 69.44 | 65.79 |
| CDX93533 | Canola | cytosol | 68.75 | 65.13 |
| CDX95028 | Canola | cytosol | 68.06 | 64.47 |
| AT1G08830.1 | Thale cress | cytosol | 68.06 | 64.47 |
| VIT_14s0030g00950.t01 | Wine grape | cytosol | 64.58 | 64.14 |
| KRG96907 | Soybean | extracellular, plasma membrane | 67.36 | 63.82 |
| KXG36882 | Sorghum | cytosol | 72.92 | 63.25 |
| GSMUA_Achr7P03680_001 | Banana | plasma membrane | 66.67 | 63.16 |
| Solyc01g067740.2.1 | Tomato | extracellular | 66.67 | 63.16 |
| CDY06331 | Canola | cytosol | 66.67 | 63.16 |
| Bra031642.1-P | Field mustard | cytosol | 66.67 | 63.16 |
| PGSC0003DMT400027651 | Potato | cytosol | 65.97 | 62.5 |
| VIT_14s0030g00830.t01 | Wine grape | cytosol | 65.28 | 62.25 |
| KRH68647 | Soybean | extracellular | 65.28 | 61.84 |
| HORVU2Hr1G021110.3 | Barley | plastid | 64.58 | 58.12 |
| VIT_14s0036g01320.t01 | Wine grape | cytosol | 29.86 | 54.43 |
| CDY22663 | Canola | plastid | 66.67 | 50.53 |
| Zm00001d022505_P002 | Maize | cytosol | 73.61 | 41.09 |
| HORVU4Hr1G067390.2 | Barley | cytosol | 51.39 | 40.22 |
| HORVU7Hr1G060130.2 | Barley | plastid, vacuole | 54.17 | 30.47 |
Protein Annotations
| MapMan:10.2.2.3 | Gene3D:2.60.40.200 | UniProt:A0A287RL12 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004784 |
| GO:GO:0005488 | GO:GO:0006801 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0019430 | GO:GO:0046872 | GO:GO:0055114 | EnsemblPlantsGene:HORVU5Hr1G066930 | EnsemblPlants:HORVU5Hr1G066930.1 | InterPro:IPR036423 |
| PFAM:PF00080 | PRINTS:PR00068 | ScanProsite:PS00087 | PANTHER:PTHR10003 | PANTHER:PTHR10003:SF34 | InterPro:SOD-like_Cu/Zn_dom_sf |
| InterPro:SOD_Cu/Zn_/chaperone | InterPro:SOD_Cu/Zn_BS | InterPro:SOD_Cu_Zn_dom | SUPFAM:SSF49329 | UniParc:UPI000B48332E | SEG:seg |
Description
No Description!
Coordinates
chrchr5H:-:509655495..509656349
Molecular Weight (calculated)
14785.2 Da
IEP (calculated)
4.583
GRAVY (calculated)
-0.101
Length
144 amino acids
Sequence
(BLAST)
(BLAST)
001: MVKDVDVLTG SEGVKGTIFF TQEGDGPTTV TESVTGLKEG LHGFHVHALG DTTNGCMSTG PHFNPAGHVH GAPEDEIRHA GDLGNVTAGA DGVANINVTD
101: CHIPLAGPHS IIGHDVVVHG DADDLGKGNT LETLESYIFV PPCA
101: CHIPLAGPHS IIGHDVVVHG DADDLGKGNT LETLESYIFV PPCA
001: MAKGVAVLNS SEGVTGTIFF TQEGDGVTTV SGTVSGLKPG LHGFHVHALG DTTNGCMSTG PHFNPDGKTH GAPEDANRHA GDLGNITVGD DGTATFTITD
101: CQIPLTGPNS IVGRAVVVHA DPDDLGKGGH ELSLATGNAG GRVACGIIGL QG
101: CQIPLTGPNS IVGRAVVVHA DPDDLGKGGH ELSLATGNAG GRVACGIIGL QG
Arabidopsis Description
CSD1Superoxide dismutase [Cu-Zn] 1 [Source:UniProtKB/Swiss-Prot;Acc:P24704]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.