Factsheet for TraesCS2B01G417000.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G127900.1
TraesCS3B01G147100.1
TraesCS3D01G128900.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12520.1	TraesCS3A01G127900.1	AT3G15660.1	21798944
AT1G12520.1	TraesCS3B01G147100.1	AT3G15660.1	21798944
AT1G12520.1	TraesCS3D01G128900.1	AT3G15660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G399000.1	Wheat	plastid	96.43	95.5
TraesCS2D01G396500.1	Wheat	plastid	91.56	91.26
HORVU2Hr1G094650.1	Barley	extracellular	68.83	87.6
OQU82186	Sorghum	cytosol	68.18	85.37
Zm00001d026069_P001	Maize	cytosol	28.57	83.81
Zm00001d002611_P002	Maize	plastid	78.25	78.25
Os04t0573200-01	Rice	plastid	78.9	77.88
VIT_02s0025g04830.t01	Wine grape	cytosol, peroxisome, plastid	55.19	67.19
KRH57335	Soybean	plastid	61.36	62.17
GSMUA_Achr4P24900_001	Banana	plastid	60.06	61.87
Solyc08g079830.2.1	Tomato	plastid	61.36	60.77
PGSC0003DMT400009994	Potato	plastid	60.71	59.94
CDY21055	Canola	plastid	58.77	57.1
Bra016768.1-P	Field mustard	plastid	58.44	56.96
CDY58614	Canola	plastid	58.44	56.6
CDY16008	Canola	plastid	57.79	55.97
AT1G12520.1	Thale cress	plastid	58.12	55.94
CDY26568	Canola	plastid	57.47	55.84
CDY39819	Canola	plastid	35.71	50.23
Bra036642.1-P	Field mustard	plastid	35.39	49.77
CDY03250	Canola	plastid	35.39	49.77
Bra026968.1-P	Field mustard	cytosol	56.82	34.72

Protein Annotations

Gene3D:2.60.40.200	Gene3D:3.30.70.100	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006801	GO:GO:0006810	GO:GO:0008150
GO:GO:0008152	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009987	GO:GO:0016532
GO:GO:0030001	GO:GO:0030234	GO:GO:0046872	InterPro:HMA_dom	InterPro:HMA_dom_sf	InterPro:IPR006121
InterPro:IPR036423	PFAM:PF00080	PFAM:PF00403	PFscan:PS50846	PANTHER:PTHR10003	PANTHER:PTHR10003:SF27
InterPro:SOD-like_Cu/Zn_dom_sf	InterPro:SOD_Cu/Zn_/chaperone	InterPro:SOD_Cu_Zn_dom	SUPFAM:SSF49329	SUPFAM:SSF55008	SignalP:SignalP-noTM
EnsemblPlantsGene:TraesCS2B01G417000	EnsemblPlants:TraesCS2B01G417000.1	TIGR:cd00371	SEG:seg	:	:

Description

No Description!

Coordinates

chr2B:-:596413052..596417727

Molecular Weight (calculated)

32156.3 Da

IEP (calculated)

5.484

GRAVY (calculated)

0.028

Length

308 amino acids

Sequence
(BLAST)

001: MVGFLRAFTA ASAVPAAAVA AVALSSSSPS RSPSSRLRFP LPPSLSAFAA SSASSSPVRA PTAAPPMAAA ATADLSAPDK GTALPELTTE FMVDMKCEGC
101: VTAVKNKLQT LEGIQNIEVD FNNQVVRVRG SLPVKLMLDA LRQTGRDARL IGQGNPDDFL VSAAVAEFKG PVIFGVVRLA QVNMELARVE ATFSGLSPGK
201: HGWSINEFGD LTKGAESTGK VYNPQDYLSD KLLGDLGTLE AGEREAQFSG SKEKLKVVDL IGRSIALYAT EDRSDAGLAA AVVARSAGVG ENYKKLCTCD
301: GVTIWESS

Best Arabidopsis Sequence Match ( AT1G12520.1 )
(BLAST)

001: MASILRSVAT TSAVVAAASA IPIAIAFSSS SSSSSTNPKS QSLNFSFLSR SSPRLLGLSR SFVSSPMATA LTSDRNLHQE DRAMPQLLTE FMVDMTCEGC
101: VNAVKNKLET IEGIEKVEVD LSNQVVRILG SSPVKAMTQA LEQTGRKARL IGQGVPQDFL VSAAVAEFKG PDIFGVVRFA QVSMELARIE ANFTGLSPGT
201: HSWCINEYGD LTNGAASTGS LYNPFQDQTG TEPLGDLGTL EADKNGEAFY SGKKEKLKVA DLIGRAVVVY KTDDNKSGPG LTAAVIARSA GVGENYKKLC
301: SCDGTVIWEA TNSDFVASKV

Arabidopsis Description

CCSCopper chaperone for superoxide dismutase, chloroplastic/cytosolic [Source:UniProtKB/Swiss-Prot;Acc:Q9LD47]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.