Factsheet for Bra016768.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	plastid
Plant-mPloc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra021125.1-P
Bra027220.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12520.1	Bra021125.1-P	AT3G15660.1	21798944
AT1G12520.1	Bra027220.1-P	AT3G15660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY21055	Canola	plastid	99.68	99.37
AT1G12520.1	Thale cress	plastid	87.97	86.88
Zm00001d026069_P001	Maize	cytosol	24.68	74.29
VIT_02s0025g04830.t01	Wine grape	cytosol, peroxisome, plastid	56.96	71.15
KRH57335	Soybean	plastid	67.41	70.07
OQU82186	Sorghum	cytosol	54.11	69.51
HORVU2Hr1G094650.1	Barley	extracellular	52.22	68.18
Bra036642.1-P	Field mustard	plastid	44.62	64.38
Solyc08g079830.2.1	Tomato	plastid	62.66	63.67
PGSC0003DMT400009994	Potato	plastid	62.66	63.46
Zm00001d002611_P002	Maize	plastid	59.81	61.36
TraesCS2D01G396500.1	Wheat	plastid	57.91	59.22
TraesCS2A01G399000.1	Wheat	plastid	57.59	58.52
TraesCS2B01G417000.1	Wheat	plastid	56.96	58.44
GSMUA_Achr4P24900_001	Banana	plastid	55.06	58.19
Os04t0573200-01	Rice	plastid	56.65	57.37
Bra026968.1-P	Field mustard	cytosol	82.28	51.59

Protein Annotations

Gene3D:2.60.40.200	Gene3D:3.30.70.100	MapMan:35.1	EnsemblPlantsGene:Bra016768	EnsemblPlants:Bra016768.1	EnsemblPlants:Bra016768.1-P
GO:GO:0003674	GO:GO:0005488	GO:GO:0006801	GO:GO:0006810	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0030001	GO:GO:0046872	InterPro:HMA_dom	InterPro:HMA_dom_sf	InterPro:IPR006121
InterPro:IPR036423	UniProt:M4DJU0	PFAM:PF00080	PFAM:PF00403	PFscan:PS50846	PANTHER:PTHR10003
PANTHER:PTHR10003:SF27	InterPro:SOD-like_Cu/Zn_dom_sf	InterPro:SOD_Cu/Zn_/chaperone	InterPro:SOD_Cu_Zn_dom	SUPFAM:SSF49329	SUPFAM:SSF55008
UniParc:UPI0002546044	SEG:seg	:	:	:	:

Description

AT1G12520 (E=1e-130) ATCCS | ATCCS (COPPER CHAPERONE FOR SOD1); superoxide dismutase/ superoxide dismutase copper chaperone

Coordinates

chrA08:+:19876396..19877832

Molecular Weight (calculated)

33638.1 Da

IEP (calculated)

6.769

GRAVY (calculated)

-0.114

Length

316 amino acids

Sequence
(BLAST)

001: MASFLRSVAT TTAAVAAASA IPIAIALSSS SSSSTKSQSP NLSFLPRSSP RRLGLSRSFA SSPMTTVPVS DRNLRQEDRV MPQLLTEFMV DMKCEGCVNA
101: VKNKLETVEG IEKVEVDLPN QVVRILGSSP VKAMTQALEQ TGRKARLIGQ GVPQDFLVSA AVAEFKGPDI FGVVRFAQVS MELARIEANF TGLSPGKHSW
201: CINEYGDLTN GAASTGNLYN PLQDHTHTEP LGGLGTLEAD QSGEAFYTGK KEKLKVVDLI GRAVVVYKTE DKNSGPGLTA AVIARSAGVG ENYKKLCTCD
301: GTVIWEATDS DFVTSN

Best Arabidopsis Sequence Match ( AT1G12520.1 )
(BLAST)

001: MASILRSVAT TSAVVAAASA IPIAIAFSSS SSSSSTNPKS QSLNFSFLSR SSPRLLGLSR SFVSSPMATA LTSDRNLHQE DRAMPQLLTE FMVDMTCEGC
101: VNAVKNKLET IEGIEKVEVD LSNQVVRILG SSPVKAMTQA LEQTGRKARL IGQGVPQDFL VSAAVAEFKG PDIFGVVRFA QVSMELARIE ANFTGLSPGT
201: HSWCINEYGD LTNGAASTGS LYNPFQDQTG TEPLGDLGTL EADKNGEAFY SGKKEKLKVA DLIGRAVVVY KTDDNKSGPG LTAAVIARSA GVGENYKKLC
301: SCDGTVIWEA TNSDFVASKV

Arabidopsis Description

CCSCopper chaperone for superoxide dismutase, chloroplastic/cytosolic [Source:UniProtKB/Swiss-Prot;Acc:Q9LD47]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.