CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX97692
CDY20141
CDY21857
CDY30094

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12520.1	CDX97692	AT3G15660.1	21798944
AT1G12520.1	CDY20141	AT3G15660.1	21798944
AT1G12520.1	CDY21857	AT3G15660.1	21798944
AT1G12520.1	CDY30094	AT3G15660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra016768.1-P	Field mustard	plastid	99.37	99.68
CDY58614	Canola	plastid	96.53	96.23
AT1G12520.1	Thale cress	plastid	87.7	86.88
CDY26568	Canola	plastid	84.54	84.54
CDY16008	Canola	plastid	84.23	83.96
Zm00001d026069_P001	Maize	cytosol	24.61	74.29
VIT_02s0025g04830.t01	Wine grape	cytosol, peroxisome, plastid	56.78	71.15
KRH57335	Soybean	plastid	67.51	70.39
OQU82186	Sorghum	cytosol	53.94	69.51
HORVU2Hr1G094650.1	Barley	extracellular	52.05	68.18
CDY39819	Canola	plastid	44.48	64.38
CDY03250	Canola	plastid	44.48	64.38
Solyc08g079830.2.1	Tomato	plastid	62.46	63.67
PGSC0003DMT400009994	Potato	plastid	62.46	63.46
Zm00001d002611_P002	Maize	plastid	59.62	61.36
TraesCS2D01G396500.1	Wheat	plastid	58.04	59.55
TraesCS2A01G399000.1	Wheat	plastid	57.73	58.84
TraesCS2B01G417000.1	Wheat	plastid	57.1	58.77
GSMUA_Achr4P24900_001	Banana	plastid	55.2	58.53
Os04t0573200-01	Rice	plastid	56.78	57.69

Protein Annotations

Gene3D:2.60.40.200	Gene3D:3.30.70.100	MapMan:35.1	GO:A0A078G3L8	UniProt:A0A078G3L8	EnsemblPlants:CDY21055
ProteinID:CDY21055	ProteinID:CDY21055.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0006801
GO:GO:0006810	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016532	GO:GO:0030001
GO:GO:0030234	GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00015222001	InterPro:HMA_dom	InterPro:HMA_dom_sf	InterPro:IPR006121
InterPro:IPR036423	PFAM:PF00080	PFAM:PF00403	PFscan:PS50846	PANTHER:PTHR10003	PANTHER:PTHR10003:SF27
MetaCyc:PWY-6854	InterPro:SOD-like_Cu/Zn_dom_sf	InterPro:SOD_Cu/Zn_/chaperone	InterPro:SOD_Cu_Zn_dom	SUPFAM:SSF49329	SUPFAM:SSF55008
UniParc:UPI0004EF0172	SEG:seg	:	:	:	:

Description

BnaA08g24700DBnaA08g24700D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G3L8]

Coordinates

chrLK032115:-:497463..499230

Molecular Weight (calculated)

33794.3 Da

IEP (calculated)

7.343

GRAVY (calculated)

-0.128

Length

317 amino acids

Sequence
(BLAST)

001: MASFLRSVAT TTAAVAAASA IPIAIALSSS SSSSTKSQSP NLSFLPRSSP RRLGLSRSFA SSPMTTVPVS DRNLRQEDRV MPQLLTEFMV DMKCEGCVNA
101: VKNKLETVEG RIEKVEVDLP NQVVRILGSS PVKAMTQALE QTGRKARLIG QGVPQDFLVS AAVAEFKGPD IFGVVRFAQV SMELARIEAN FTGLSPGKHS
201: WCINEYGDLT NGAASTGNLY NPLQDHTHTE PLGGLGTLEA DQSGEAFYTG KKEKLKVVDL IGRAVVVYKT EDKNSGPGLT AAVIARSAGV GENYKKLCTC
301: DGTVIWEATD SDFVTSN

Best Arabidopsis Sequence Match ( AT1G12520.1 )
(BLAST)

001: MASILRSVAT TSAVVAAASA IPIAIAFSSS SSSSSTNPKS QSLNFSFLSR SSPRLLGLSR SFVSSPMATA LTSDRNLHQE DRAMPQLLTE FMVDMTCEGC
101: VNAVKNKLET IEGIEKVEVD LSNQVVRILG SSPVKAMTQA LEQTGRKARL IGQGVPQDFL VSAAVAEFKG PDIFGVVRFA QVSMELARIE ANFTGLSPGT
201: HSWCINEYGD LTNGAASTGS LYNPFQDQTG TEPLGDLGTL EADKNGEAFY SGKKEKLKVA DLIGRAVVVY KTDDNKSGPG LTAAVIARSA GVGENYKKLC
301: SCDGTVIWEA TNSDFVASKV

Arabidopsis Description

CCSCopper chaperone for superoxide dismutase, chloroplastic/cytosolic [Source:UniProtKB/Swiss-Prot;Acc:Q9LD47]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.