Factsheet for Os04t0573200-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
plastid 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	plastid
Plant-mPloc:	plastid
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0174900-01
Os01t0530400-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12520.1	Os01t0174900-01	AT3G15660.1	21798944
AT1G12520.1	Os01t0530400-01	AT3G15660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d026069_P001	Maize	cytosol	29.49	87.62
OQU82186	Sorghum	cytosol	68.91	87.4
HORVU2Hr1G094650.1	Barley	extracellular	65.71	84.71
Zm00001d002611_P002	Maize	plastid	81.41	82.47
TraesCS2D01G396500.1	Wheat	plastid	79.81	80.58
TraesCS2A01G399000.1	Wheat	plastid	80.13	80.39
TraesCS2B01G417000.1	Wheat	plastid	77.88	78.9
VIT_02s0025g04830.t01	Wine grape	cytosol, peroxisome, plastid	54.49	67.19
KRH57335	Soybean	plastid	61.86	63.49
GSMUA_Achr4P24900_001	Banana	plastid	60.26	62.88
Solyc08g079830.2.1	Tomato	plastid	62.5	62.7
PGSC0003DMT400009994	Potato	plastid	61.54	61.54
CDY21055	Canola	plastid	57.69	56.78
Bra016768.1-P	Field mustard	plastid	57.37	56.65
CDY58614	Canola	plastid	57.05	55.97
AT1G12520.1	Thale cress	plastid	57.37	55.94
CDY16008	Canola	plastid	56.41	55.35
CDY26568	Canola	plastid	56.09	55.2
CDY39819	Canola	plastid	35.9	51.14
Bra036642.1-P	Field mustard	plastid	35.58	50.68
CDY03250	Canola	plastid	34.94	49.77
Bra026968.1-P	Field mustard	cytosol	56.09	34.72

Protein Annotations

Gene3D:2.60.40.200	Gene3D:3.30.70.100	MapMan:35.1	EntrezGene:4336726	EMBL:AK120348	ProteinID:BAF15527.1
ProteinID:BAS90588.1	ProteinID:BAS90589.1	ProteinID:CAD41661.3	ProteinID:EAZ31700.1	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006801	GO:GO:0006810
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570
GO:GO:0009987	GO:GO:0016532	GO:GO:0030001	GO:GO:0030234	GO:GO:0043085	GO:GO:0046872
InterPro:HMA_dom	InterPro:HMA_dom_sf	InterPro:IPR006121	InterPro:IPR036423	EnsemblPlantsGene:Os04g0573200	EnsemblPlants:Os04t0573200-01
PFAM:PF00080	PFAM:PF00403	PFscan:PS50846	PANTHER:PTHR10003	PANTHER:PTHR10003:SF27	UniProt:Q7XTY9
InterPro:SOD-like_Cu/Zn_dom_sf	InterPro:SOD_Cu/Zn_/chaperone	InterPro:SOD_Cu_Zn_dom	SUPFAM:SSF49329	SUPFAM:SSF55008	SignalP:SignalP-noTM
UniParc:UPI00001B1D5B	RefSeq:XP_015635510.1	SEG:seg	:	:	:

Description

superoxide dismutaseSuperoxide dismutase, copper/zinc binding domain containing protein. (Os04t0573200-01);Similar to OSIGBa0147H17.7 protein. (Os04t0573200-02);Superoxide dismutase, copper/zinc binding domain containing protein. (Os04t0573200-03);Hypothetical gene. (Os04t0573200-04);Hypothetical gene. (Os04t0573200-05)

Coordinates

chr4:+:28874420..28878849

Molecular Weight (calculated)

32231.4 Da

IEP (calculated)

5.894

GRAVY (calculated)

0.065

Length

312 amino acids

Sequence
(BLAST)

001: MVGFLRALTA ASAVPAAAAV AAVALSTNSS SSSRLRLPSP ASLPSLSSAY AAAPASGSAR KPNAVPPMAA AAATADLSAA ADKGAALPEL MTEFMVDMKC
101: DGCVTAVKNK FQTLEGIKNI EVDLNNQVVR VLGSLPVNTM LDTLHQTGRD ARLIGQGNPN DFLVSAAVAE FKGPVIFGVV RLAQVNMELA IVEATFSGLS
201: PGKHGWSINE FGDLTRGAES TGKVYNPSDY RSNKPLGDLG TLEAGEKGEA QFSASKEKLK VVDLIGRSIA LYATEDRSDP GIAAAVIARS AGVGENYKKL
301: CTCDGVTIWE SS

Best Arabidopsis Sequence Match ( AT1G12520.1 )
(BLAST)

001: MASILRSVAT TSAVVAAASA IPIAIAFSSS SSSSSTNPKS QSLNFSFLSR SSPRLLGLSR SFVSSPMATA LTSDRNLHQE DRAMPQLLTE FMVDMTCEGC
101: VNAVKNKLET IEGIEKVEVD LSNQVVRILG SSPVKAMTQA LEQTGRKARL IGQGVPQDFL VSAAVAEFKG PDIFGVVRFA QVSMELARIE ANFTGLSPGT
201: HSWCINEYGD LTNGAASTGS LYNPFQDQTG TEPLGDLGTL EADKNGEAFY SGKKEKLKVA DLIGRAVVVY KTDDNKSGPG LTAAVIARSA GVGENYKKLC
301: SCDGTVIWEA TNSDFVASKV

Arabidopsis Description

CCSCopper chaperone for superoxide dismutase, chloroplastic/cytosolic [Source:UniProtKB/Swiss-Prot;Acc:Q9LD47]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.