CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68515
CDX75003
CDX79705
CDX83068
CDX85505
CDY33207
CDY38110
CDY46745
CDY55578
CDY64675
CDY69935

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G49160.1	CDX75003	AT2G36930.1	21798944
AT3G49160.1	CDX79705	AT2G36930.1	21798944
AT3G49160.1	CDY33207	AT2G36930.1	21798944
AT3G49160.1	CDY46745	AT2G36930.1	21798944
AT3G49160.1	CDX85505	AT3G15420.1	21798944
AT3G49160.1	CDY38110	AT3G15420.1	21798944
AT3G49160.1	CDY55578	AT3G15420.1	21798944
AT3G49160.1	CDY64675	AT3G15420.1	21798944
AT3G49160.1	CDX68515	AT3G49160.1	21798944
AT3G49160.1	CDX83068	AT3G49160.1	21798944
AT3G49160.1	CDY69935	AT3G49160.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX68515	Canola	mitochondrion	66.53	69.7
Bra029936.1-P	Field mustard	endoplasmic reticulum, vacuole	71.35	67.1
CDY69935	Canola	cytosol	39.94	60.17
AT3G49160.1	Thale cress	cytosol	54.41	55.63
VIT_16s0050g02660.t01	Wine grape	plastid	36.09	34.56
PGSC0003DMT400050451	Potato	plastid	32.64	31.35
Solyc06g051930.2.1	Tomato	plastid	32.64	31.35
GSMUA_Achr7P10730_001	Banana	plastid	23.42	27.16
CDY60038	Canola	cytosol	6.2	20.36
CDY42677	Canola	cytosol	2.89	19.09
CDX81194	Canola	cytosol	5.65	19.07
CDY04408	Canola	cytosol	2.34	18.28
CDY01123	Canola	cytosol	1.1	18.18
CDY47408	Canola	cytosol	2.2	17.2
CDY26450	Canola	cytosol	2.07	16.13
CDY32790	Canola	cytosol	6.2	10.69
CDY46578	Canola	cytosol	6.2	10.69
CDY27175	Canola	cytosol, mitochondrion	6.61	10.62
CDY11933	Canola	cytosol, mitochondrion, plastid	6.2	10.37
CDY39852	Canola	cytosol	6.61	9.74
CDX84432	Canola	cytosol	6.61	9.74
CDY41529	Canola	cytosol	6.61	9.74
CDY50878	Canola	cytosol	6.47	9.59
CDY66977	Canola	cytosol	6.47	9.55
CDX72091	Canola	mitochondrion, plastid	6.06	9.54
CDY66490	Canola	cytosol	6.34	9.35
CDY66652	Canola	plastid	7.44	9.31
CDY19645	Canola	plastid	7.44	9.29
CDY60911	Canola	plastid	7.3	9.14
CDX81114	Canola	cytosol	6.2	9.13
CDX78344	Canola	cytosol	6.2	9.13
CDY48872	Canola	plastid	7.02	8.93
CDX92969	Canola	plastid	7.02	8.87
CDY35484	Canola	plastid	7.02	8.84
CDY40829	Canola	plastid	7.02	8.84
CDY21551	Canola	cytosol	6.2	8.82
CDX69938	Canola	cytosol	6.2	8.82
CDX94878	Canola	plastid	7.02	8.78
CDY32285	Canola	plastid	6.89	8.76
CDY42900	Canola	cytosol	5.65	8.69
CDX74201	Canola	cytosol	5.51	8.44
CDX92057	Canola	cytosol	5.51	8.44
CDX78139	Canola	cytosol, plastid	5.37	7.4
CDX76243	Canola	cytosol, plastid	5.37	7.4
CDX67554	Canola	cytosol, plastid	5.37	7.4
CDX73585	Canola	cytosol, plastid	5.23	7.21
CDY58286	Canola	cytosol, plastid	5.23	7.21
CDY13321	Canola	cytosol, plastid	5.23	7.21
CDY36795	Canola	endoplasmic reticulum	3.58	6.6
CDY00607	Canola	cytosol	2.89	5.44
CDY45309	Canola	plastid	1.24	2.89
CDY42678	Canola	cytosol	0.28	2.25
CDY60039	Canola	cytosol	0.41	1.29
CDX81195	Canola	cytosol	0.41	1.29
CDY42679	Canola	mitochondrion	0.0	0.0

Protein Annotations

KEGG:00010+2.7.1.40	KEGG:00230+2.7.1.40	KEGG:00620+2.7.1.40	Gene3D:2.40.33.10	Gene3D:3.20.20.60	MapMan:35.1
GO:A0A078D773	EnsemblPlants:CDX83068	ProteinID:CDX83068	ProteinID:CDX83068.1	ncoils:Coil	GO:GO:0000287
GO:GO:0003674	GO:GO:0003824	GO:GO:0004743	GO:GO:0005488	GO:GO:0005975	GO:GO:0006091
GO:GO:0006096	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009058
GO:GO:0009987	GO:GO:0016740	GO:GO:0030955	EnsemblPlantsGene:GSBRNA2T00138559001	InterPro:IPR015806	PFAM:PF00224
PANTHER:PTHR11817	PANTHER:PTHR11817:SF28	MetaCyc:PWY-1042	MetaCyc:PWY-2221	MetaCyc:PWY-5484	MetaCyc:PWY-5723
MetaCyc:PWY-6142	MetaCyc:PWY-6886	MetaCyc:PWY-6901	MetaCyc:PWY-7003	MetaCyc:PWY-7218	MetaCyc:PWY-7383
InterPro:Pyr_Knase	InterPro:Pyrv/PenolPyrv_Kinase-like_dom	InterPro:Pyrv_Knase-like_insert_dom_sf	InterPro:Pyrv_Knase_brl	InterPro:Pyrv_Knase_insert_dom_sf	SUPFAM:SSF50800
SUPFAM:SSF51621	UniPathway:UPA00109	UniParc:UPI0004EED0E0	SEG:seg	:	:

Description

BnaA01g20680D

Coordinates

chrLK031831:-:1272638..1275645

Molecular Weight (calculated)

60248.6 Da

IEP (calculated)

8.571

GRAVY (calculated)

-0.142

Length

726 amino acids

Sequence
(BLAST)

001: MTSYMSSAPS VTNLWTTPNN VIQLADMVST ESYHLLSGKK TLIFSLRPTK SFPLSLTQMK IRVPRTLAFA SAKGKGKAES GVEAAIVGDN NTSTERNWSF
101: DFPESKAEFC LVDSEACQNL SSLLEKLNAL RSHLLAAEKW NASRLQSCDS KYLQCATNLI HYMALRSLDT EQLNSYLASL GLSSLDNNNN LSVLSNLDAT
201: INLLMKSPME SWKQQKGNKI IEKNDKGRVL SSYKESLLGK LREGKRTHIM VTVGKEATES ETFITDILKA GASVIRINCA HGDPTLWGEI IKRVRRTSQM
301: LEMPCRVLMD LAGPKLRTGT LKPGPCVMKV SPKKDAYGNV ASPAIVWLSV TGTEPPPHLS PDATIFVQDQ EFLAGLQIGD SVRLYDARGK KKKLRISKEF
401: DVFSSTGFVA ECFDTAYVES GTELCVKGNK GRRLLGEVVD VPPKESFVRL RVGDLLVITR EGSFDEPSVT VPGAHRLTCP SGYLFDSVKP GETIGFDDGK
501: IWGTIKGASP AEVIVSITHA GXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
601: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXECG
701: GNLNLCENLF QKVCGYLRDI FIGLRG

Best Arabidopsis Sequence Match ( AT3G49160.1 )
(BLAST)

001: MVGLDSSHLL RDKILCFSSR SHINNQHKKT SYALSLNHMK LPIQRTLAFA LARGKGEAES FSRLEATFGD NTSTECTWSF DFPDSKDAMS HLKSEADLSG
101: SNGANNVASV IEKLNALRSH LLAAEKWNAS QLHLCDSKYL ECATNLVHYM ALRSLDIEQL NSHLASLGLS SLDNNNLDVL AHLNASINLL MNDQNAVTES
201: WTNVYPKGKS TKKNDKGRVL SYKESLLGKL REGRSTHIMV TIGEEATLSE TFITDILKAG TSVIRINCAH GDPSIWGEII KRVRRTSQML EMPCRVHMDL
301: AGPKLRTGTL KPGPCVMKIS PKKDAYGNVV SPALVWLCLT GTEPPAHVSP DATISVQGQD FLAGLQIGDS IRLCDARGRK RRLKISKEFH VFNSTGFVAE
401: CFDTAYIESG TELSVKGKKG RRLVGRVVDV PPKESFVRLK VGDLLVITRE GSLDEPSVTV PGAHRLTCPS GYLFDSVKPG ETIGFDDGKI WGVIKGTSPS
501: EVIVSITHAR PKGTKLGSEK SINIPQSDIH FKGLTSKDIK DLDYVASHAD MVGISFIRDV HDITVLRQEL KKRKLDDLGI VLKIETKSGF KNLSLILLEA
601: MKCSNPLGIM IARGDLAVEC GWERLANMQE EIIAICKAAR VPVIMATQVL ESLVKSGVPT RAEITDAANA KRASCVMLNK GKNIVEAVSM LDTILHTKLI
701: YKKSDSENLH

Arabidopsis Description

PKP4Plastidial pyruvate kinase 4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M3B6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.