Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX85505 | Canola | cytosol | 91.45 | 93.04 |
| CDY64675 | Canola | cytosol | 91.45 | 93.04 |
| Bra023568.1-P | Field mustard | cytosol | 73.5 | 88.66 |
| CDY55578 | Canola | cytosol | 75.21 | 76.52 |
| AT1G80745.1 | Thale cress | cytosol | 62.39 | 71.57 |
| AT3G15420.1 | Thale cress | cytosol | 62.39 | 68.22 |
| Solyc07g063290.2.1 | Tomato | cytosol, nucleus | 52.14 | 45.52 |
| PGSC0003DMT400003969 | Potato | cytosol | 52.14 | 44.53 |
| PGSC0003DMT400032421 | Potato | cytosol | 52.14 | 44.2 |
| VIT_19s0014g03060.t01 | Wine grape | cytosol | 50.43 | 40.41 |
| KRH22122 | Soybean | cytosol | 46.15 | 40.0 |
| TraesCS2D01G369300.1 | Wheat | cytosol | 36.75 | 30.5 |
| GSMUA_Achr11P... | Banana | cytosol | 35.9 | 30.22 |
| Zm00001d048492_P001 | Maize | nucleus | 35.9 | 29.79 |
| TraesCS2A01G373100.1 | Wheat | cytosol | 36.75 | 29.66 |
| TraesCS2B01G390200.1 | Wheat | cytosol | 35.9 | 29.17 |
| EER95620 | Sorghum | nucleus | 34.19 | 28.78 |
| Zm00001d027399_P001 | Maize | nucleus | 34.19 | 28.78 |
| Os04t0530000-01 | Rice | cytosol | 35.04 | 28.47 |
| TraesCS3D01G466600.1 | Wheat | cytoskeleton, cytosol, nucleus | 32.48 | 28.15 |
| TraesCS3B01G513600.1 | Wheat | extracellular, golgi, plasma membrane | 32.48 | 18.54 |
| KXG26700 | Sorghum | plastid | 23.08 | 11.95 |
| TraesCS3A01G470900.1 | Wheat | peroxisome | 6.84 | 10.53 |
Protein Annotations
| EnsemblPlants:CDY38110 | EnsemblPlantsGene:GSBRNA2T00065387001 | InterPro:TFIIIC_tau55-rel | PANTHER:PTHR21860 | PFAM:PF10419 | ProteinID:CDY38110 |
| ProteinID:CDY38110.1 | SEG:seg | UniParc:UPI0004EEC059 | UniProt:A0A078HI31 | MapMan:15.4.4.5 | : |
Description
BnaC02g06630DBnaC02g06630D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HI31]
Coordinates
chrLK032416:-:176553..177486
Molecular Weight (calculated)
13103.4 Da
IEP (calculated)
4.166
GRAVY (calculated)
-0.473
Length
117 amino acids
Sequence
(BLAST)
(BLAST)
001: MNDESVKVSK EEEEEEEYVL MDLDDVSRHI DIPQDAPYTL SGLDTLNPIL TIDGKLKLVG EYLETIGTCL AFSDKEVAAA ENQTPRKTVE PVAKIHKILK
101: FRLALDNEDG ETRPTSL
101: FRLALDNEDG ETRPTSL
001: MEEEFVMIDL DEVSRHIEIP SDAPYTLSGL DTLNPVLTID GKIKLVGEYI ETIGTCLAFS EKEEVSASEN QMPHKKIIEP VAKLHKILKF RLAALDNDDG
101: ETKTNNL
101: ETKTNNL
Arabidopsis Description
At3g15420 [Source:UniProtKB/TrEMBL;Acc:Q9LDR3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.