Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G373100.1 | Wheat | cytosol | 97.92 | 97.24 |
| TraesCS2D01G369300.1 | Wheat | cytosol | 95.14 | 97.16 |
| Os04t0530000-01 | Rice | cytosol | 68.06 | 68.06 |
| Zm00001d027399_P001 | Maize | nucleus | 62.5 | 64.75 |
| EER95620 | Sorghum | nucleus | 60.42 | 62.59 |
| Zm00001d048492_P001 | Maize | nucleus | 58.33 | 59.57 |
| TraesCS3B01G513600.1 | Wheat | extracellular, golgi, plasma membrane | 70.83 | 49.76 |
| GSMUA_Achr11P... | Banana | cytosol | 47.22 | 48.92 |
| VIT_19s0014g03060.t01 | Wine grape | cytosol | 41.67 | 41.1 |
| PGSC0003DMT400003969 | Potato | cytosol | 35.42 | 37.23 |
| PGSC0003DMT400032421 | Potato | cytosol | 35.42 | 36.96 |
| Solyc07g063290.2.1 | Tomato | cytosol, nucleus | 34.03 | 36.57 |
| CDY38110 | Canola | cytosol | 29.17 | 35.9 |
| CDY64675 | Canola | cytosol | 28.47 | 35.65 |
| CDX85505 | Canola | cytosol | 28.47 | 35.65 |
| KRH22122 | Soybean | cytosol | 33.33 | 35.56 |
| CDY55578 | Canola | cytosol | 27.08 | 33.91 |
| Bra023568.1-P | Field mustard | cytosol | 22.22 | 32.99 |
| AT1G80745.1 | Thale cress | cytosol | 22.92 | 32.35 |
| KXG26700 | Sorghum | plastid | 50.0 | 31.86 |
| AT3G15420.1 | Thale cress | cytosol | 23.61 | 31.78 |
Protein Annotations
| EnsemblPlants:TraesCS2B01G390200.1 | EnsemblPlantsGene:TraesCS2B01G390200 | InterPro:TFIIIC_tau55-rel | ncoils:Coil | PANTHER:PTHR21860 | PFAM:PF10419 |
| SEG:seg | MapMan:15.4.4.5 | : | : | : | : |
Description
No Description!
Coordinates
chr2B:+:553976480..553978394
Molecular Weight (calculated)
16538.2 Da
IEP (calculated)
4.548
GRAVY (calculated)
-0.992
Length
144 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKEAEKDKQ IAEEEEDEEE EEYVLLELDD VHYSCIQPNA PYILSGLDTL TPTLVVGDGL KMIGEYEETV GTCYLFSESD APPKPVHEEP APPKENKDKQ
101: GRNIKEAPSK EVKHLTSVHK ILKFRSTSEG RQEHRAYRYR DKEF
101: GRNIKEAPSK EVKHLTSVHK ILKFRSTSEG RQEHRAYRYR DKEF
001: MEEEFVMIDL DEVSRHIEIP SDAPYTLSGL DTLNPVLTID GKIKLVGEYI ETIGTCLAFS EKEEVSASEN QMPHKKIIEP VAKLHKILKF RLAALDNDDG
101: ETKTNNL
101: ETKTNNL
Arabidopsis Description
At3g15420 [Source:UniProtKB/TrEMBL;Acc:Q9LDR3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.