Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G390200.1 | Wheat | cytosol | 97.24 | 97.92 |
| TraesCS2D01G369300.1 | Wheat | cytosol | 93.79 | 96.45 |
| Os04t0530000-01 | Rice | cytosol | 68.28 | 68.75 |
| Zm00001d027399_P001 | Maize | nucleus | 61.38 | 64.03 |
| EER95620 | Sorghum | nucleus | 59.31 | 61.87 |
| Zm00001d048492_P001 | Maize | nucleus | 58.62 | 60.28 |
| GSMUA_Achr11P... | Banana | cytosol | 46.21 | 48.2 |
| VIT_19s0014g03060.t01 | Wine grape | cytosol | 41.38 | 41.1 |
| TraesCS3A01G470900.1 | Wheat | peroxisome | 20.0 | 38.16 |
| CDY38110 | Canola | cytosol | 29.66 | 36.75 |
| PGSC0003DMT400003969 | Potato | cytosol | 33.79 | 35.77 |
| CDY64675 | Canola | cytosol | 28.28 | 35.65 |
| CDX85505 | Canola | cytosol | 28.28 | 35.65 |
| PGSC0003DMT400032421 | Potato | cytosol | 33.79 | 35.51 |
| Solyc07g063290.2.1 | Tomato | cytosol, nucleus | 32.41 | 35.07 |
| KRH22122 | Soybean | cytosol | 32.41 | 34.81 |
| CDY55578 | Canola | cytosol | 26.9 | 33.91 |
| Bra023568.1-P | Field mustard | cytosol | 22.07 | 32.99 |
| AT1G80745.1 | Thale cress | cytosol | 22.76 | 32.35 |
| AT3G15420.1 | Thale cress | cytosol | 23.45 | 31.78 |
| KXG26700 | Sorghum | plastid | 48.97 | 31.42 |
Protein Annotations
| EnsemblPlants:TraesCS2A01G373100.1 | EnsemblPlantsGene:TraesCS2A01G373100 | InterPro:TFIIIC_tau55-rel | ncoils:Coil | PANTHER:PTHR21860 | PFAM:PF10419 |
| SEG:seg | MapMan:15.4.4.5 | : | : | : | : |
Description
No Description!
Coordinates
chr2A:+:615520370..615522366
Molecular Weight (calculated)
16619.4 Da
IEP (calculated)
4.554
GRAVY (calculated)
-0.993
Length
145 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKEAEKDKQ IAEEEEEEEE EEEYVLLELD DVHYSCIQPN APYILSGLDT LTPTLVVGDG LKMIGEYEET VGTCYLFSES DAPPKPVHGE PAPPKENKDK
101: QGRNIKEAPP KEVKHLTSVH KILKFRSTSE GRQEHRAYRY RDKEF
101: QGRNIKEAPP KEVKHLTSVH KILKFRSTSE GRQEHRAYRY RDKEF
001: MEEEFVMIDL DEVSRHIEIP SDAPYTLSGL DTLNPVLTID GKIKLVGEYI ETIGTCLAFS EKEEVSASEN QMPHKKIIEP VAKLHKILKF RLAALDNDDG
101: ETKTNNL
101: ETKTNNL
Arabidopsis Description
At3g15420 [Source:UniProtKB/TrEMBL;Acc:Q9LDR3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.