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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus, cytosol

Predictor Summary:
  • nucleus 1
  • extracellular 1
  • cytosol 3
  • plasma membrane 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, nucleus
Any Predictor:cytosol, extracellular, mitochondrion, nucleus, plasma membrane
BaCelLo:nucleus
EpiLoc:extracellular
MultiLoc:cytosol
Plant-mPloc:plasma membrane
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 nucleus: 28394025
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc06g053330.2.1
Solyc08g081570.2.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G15420.1 Solyc08g081570.2.1 AT1G63970.1 21798944
AT3G15420.1 Solyc06g053330.2.1 AT3G13940.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400003969 Potato cytosol 95.52 93.43
PGSC0003DMT400032421 Potato cytosol 93.28 90.58
CDX85505 Canola cytosol 46.27 53.91
CDY64675 Canola cytosol 46.27 53.91
Bra023568.1-P Field mustard cytosol 38.81 53.61
CDY55578 Canola cytosol 45.52 53.04
CDY38110 Canola cytosol 45.52 52.14
AT1G80745.1 Thale cress cytosol 39.55 51.96
VIT_19s0014g03060.t01 Wine grape cytosol 55.97 51.37
KRH22122 Soybean cytosol 50.0 49.63
AT3G15420.1 Thale cress cytosol 39.55 49.53
GSMUA_Achr11P... Banana cytosol 41.04 39.57
TraesCS2D01G369300.1 Wheat cytosol 36.57 34.75
TraesCS2B01G390200.1 Wheat cytosol 36.57 34.03
EER95620 Sorghum nucleus 35.07 33.81
Os04t0530000-01 Rice cytosol 35.82 33.33
TraesCS2A01G373100.1 Wheat cytosol 35.07 32.41
Zm00001d027399_P001 Maize nucleus 33.58 32.37
Zm00001d048492_P001 Maize nucleus 32.84 31.21
TraesCS3D01G466600.1 Wheat cytoskeleton, cytosol, nucleus 31.34 31.11
TraesCS3B01G513600.1 Wheat extracellular, golgi, plasma membrane 31.34 20.49
TraesCS3A01G470900.1 Wheat peroxisome 9.7 17.11
KXG26700 Sorghum plastid 26.12 15.49
Protein Annotations
EnsemblPlants:Solyc07g063290.2.1EnsemblPlantsGene:Solyc07g063290.2InterPro:TFIIIC_tau55-relPANTHER:PTHR21860PFAM:PF10419SEG:seg
UniParc:UPI000276BC46UniProt:K4CH12MapMan:15.4.4.5:::
Description
No Description!
Coordinates
chr7:-:65794602..65798691
Molecular Weight (calculated)
14992.8 Da
IEP (calculated)
4.053
GRAVY (calculated)
-0.633
Length
134 amino acids
Sequence
(BLAST)
001: MENQSLCDDN MEEAEYVLLD LDDLPCEVYI PPNAPYVLSG LDTLNPILTI DGKIKLIGQY DETIGTCLVF DEKDTPPEEA GPSEANLCPG RPTLDPKQTK
101: SKQVKPVTQL QKILKFKLLQ NSETEDAREK PKED
Best Arabidopsis Sequence Match ( AT3G15420.1 )
(BLAST)
001: MEEEFVMIDL DEVSRHIEIP SDAPYTLSGL DTLNPVLTID GKIKLVGEYI ETIGTCLAFS EKEEVSASEN QMPHKKIIEP VAKLHKILKF RLAALDNDDG
101: ETKTNNL
Arabidopsis Description
At3g15420 [Source:UniProtKB/TrEMBL;Acc:Q9LDR3]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.