Factsheet for Solyc06g053330.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
plastid 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, peroxisome, plastid, secretory
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	peroxisome

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400042035	Potato	nucleus	62.16	89.56
VIT_09s0002g01860.t01	Wine grape	nucleus	38.33	56.53
KRH12306	Soybean	nucleus	32.69	47.88
CDY71531	Canola	cytosol, nucleus	18.84	45.7
GSMUA_AchrUn_...	Banana	nucleus	28.82	42.22
Bra021519.1-P	Field mustard	nucleus	28.5	41.36
CDY67555	Canola	nucleus	28.5	41.26
AT3G13940.1	Thale cress	nucleus	29.15	40.95
TraesCS4A01G151300.1	Wheat	nucleus	26.25	38.72
TraesCS4D01G154400.1	Wheat	nucleus, plastid	25.93	38.24
TraesCS4B01G158200.1	Wheat	nucleus	25.12	37.05
HORVU4Hr1G033420.3	Barley	nucleus	24.8	35.98
Os11t0615100-01	Rice	nucleus	26.25	33.68
Zm00001d048834_P001	Maize	nucleus	25.6	31.61
OQU83842	Sorghum	nucleus	24.8	31.05

Protein Annotations

MapMan:15.2.5.2	GO:GO:0001054	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824
GO:GO:0003899	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005730	GO:GO:0005736	GO:GO:0006139	GO:GO:0006351	GO:GO:0006360	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	UniProt:K4C620	PFAM:PF06870
PANTHER:PTHR14440	InterPro:RNA_pol-assoc_fac_A49-like	EnsemblPlantsGene:Solyc06g053330.2	EnsemblPlants:Solyc06g053330.2.1	UniParc:UPI000276749C	SEG:seg

Description

No Description!

Coordinates

chr6:-:36076371..36082761

Molecular Weight (calculated)

70412.2 Da

IEP (calculated)

9.745

GRAVY (calculated)

-0.379

Length

621 amino acids

Sequence
(BLAST)

001: MRPKSDPIKS IQVGLKPQPP QPYYFSQTLK RIAVVITVLG PLHSPSNSVR SSFVVSMMCF NRFISRSLYH CSRTIFTCQT PYVYSQVSHF MMQIFSETHF
101: YSFTKLLISS KFIASIYKSK SASSGRISTI VNEISRLTLL EVADFGGGSK EESGLLPIMA MMMLGMRVAE KTDKKREGLC LLLLTFLLLV AKHKEKKKTL
201: EEQNPSEVEG KMGESIKKKS KKKKKETHTV TMETIAENPN NISPMVGYFP SGYDPLRNTN DGVEELSTKL YRNVRRNNRL QVVVSPYGSQ VDFVGTNYSG
301: EATSAQLCTY SLGILDKETQ TLKIVPIAAN KIIRLEPRVR GSEVPDAEDP DTAKQELTAE ERNDKMRELT QMYSSKKSIR QARKLDSLRQ QEDTGNQEEF
401: DRNIAGAINK EALEVTVATD SARNIPPHDL DATIPQLAYP LDRIISKGEW DFLLDIFELT EAGAEMTPDL YPSFVRNRSY KLEHIQDEDE KKRLAGILSF
501: ITHLVKFKDK HSMDGVSSAK HHKFPGILSQ KFTSMFSISD SKRLPEEKVT LLINYVLVLT LFADDFRSDP SDIAKDLRIN AVALRPFYEY LGCKLVREKN
601: IVLATLPVPL VFPGVRRKRR R

Best Arabidopsis Sequence Match ( AT3G13940.1 )
(BLAST)

001: MEGEEKNDYR NEEEDFNTPQ QLQKKQRKGK KIATETEDEN EEDKRVTLKV TQVAERPDRI SPIVAYFSTG YDPCKVDPKT GKRVHETPKV TVYKHKDDSK
101: KRIQVVVSPP GARVEFVGTN YTGEQAAMQT NTYRVGVFNR EAKTLRILPV AHNKIIRLEP RVKAQETNEE EASGSAVVKE LEELKTGERD RYNTKKAVTR
201: DKKKRALYMG DDAATQKVLD GKLSELGVNT AALEGTSSTV ARNIPPYNTA ATTANEAYPL EKIIEKGDWS FLEDIYWLLQ QETEAATEAY PVFVRNRLYR
301: LRDIKDDMKK QTVCGAATLL THLVKFKDRN SMNGYDSAKD HKMPDIFRQK FNSMFKDSES DRIPVDKINL LISYVLVLSL HVDNFMTDPE DIAKDLRIST
401: VELRKHFLQL GCKFLKQNST TVATLPTPLN FPEVNRRRRA RK

Arabidopsis Description

DNA binding / DNA-directed RNA polymerase [Source:UniProtKB/TrEMBL;Acc:Q9LVK6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.