Factsheet for VIT_09s0002g01860.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400042035	Potato	nucleus	57.72	56.38
KRH12306	Soybean	nucleus	53.68	53.3
PGSC0003DMT400006250	Potato	cytosol	21.85	51.11
CDY71531	Canola	cytosol, nucleus	28.98	47.66
GSMUA_AchrUn_...	Banana	nucleus	46.32	45.99
AT3G13940.1	Thale cress	nucleus	45.13	42.99
Bra021519.1-P	Field mustard	nucleus	42.28	41.59
CDY67555	Canola	nucleus	41.33	40.56
TraesCS4D01G154400.1	Wheat	nucleus, plastid	39.67	39.67
TraesCS4A01G151300.1	Wheat	nucleus	39.43	39.43
Solyc06g053330.2.1	Tomato	nucleus	56.53	38.33
TraesCS4B01G158200.1	Wheat	nucleus	38.24	38.24
HORVU4Hr1G033420.3	Barley	nucleus	37.29	36.68
Os11t0615100-01	Rice	nucleus	37.05	32.23
Zm00001d048834_P001	Maize	nucleus	37.05	31.01
OQU83842	Sorghum	nucleus	36.1	30.65

Protein Annotations

EntrezGene:100263424	wikigene:100263424	MapMan:15.2.5.2	ProteinID:CCB59325	ProteinID:CCB59325.1	ncoils:Coil
UniProt:F6HY02	EMBL:FN596494	GO:GO:0001054	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003824	GO:GO:0003899	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005730	GO:GO:0005736	GO:GO:0006139	GO:GO:0006351	GO:GO:0006360
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	EntrezGene:LOC100263424
wikigene:LOC100263424	PFAM:PF06870	PANTHER:PTHR14440	InterPro:RNA_pol-assoc_fac_A49-like	TIGR:TC60248	UniParc:UPI00015C8985
ArrayExpress:VIT_09s0002g01860	EnsemblPlantsGene:VIT_09s0002g01860	EnsemblPlants:VIT_09s0002g01860.t01	unigene:Vvi.11968	RefSeq:XP_002278228	RefSeq:XP_002278228.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr9:-:1642199..1646543

Molecular Weight (calculated)

47607.0 Da

IEP (calculated)

9.397

GRAVY (calculated)

-0.614

Length

421 amino acids

Sequence
(BLAST)

001: MEEEEPEISS QTLTLTPTKK RKKKKHVNVK MEVVHEHPEK IPPLVGYFPS GFDPHKPQDH ESDPPPAVKV FRNKARANRL QLVVSPNDSK VNFVGTSYSG
101: EAASAQVCTY ALGVLDKETQ TLKIVPIASN KIFRLEPRVG GSDASVDEPS SLLKGEQTAE EKAGRMRDLT NLYGTKKSIT QAKKLQALNQ KDDPRSQKDL
201: DRKLKEVVIN KEALESTSAH SARNIPPYDD TATTPQEAYR LDKIIFKGEW DYLLDILDLL QAGVEVESSA YSSFVCNRIQ KLKELEDEGE KTTLACIFSY
301: INHLLKYKDR NSMDASSAKH HKIPGILNQK FSSMFALDSD SRRLTEEKKD LLISYVLVLT LYADEFRTDP SDIARDLRMS AVKLRAHFEH LGCKLVSQNK
401: VTMATLPVPL TFPRLRQKRR R

Best Arabidopsis Sequence Match ( AT3G13940.1 )
(BLAST)

001: MEGEEKNDYR NEEEDFNTPQ QLQKKQRKGK KIATETEDEN EEDKRVTLKV TQVAERPDRI SPIVAYFSTG YDPCKVDPKT GKRVHETPKV TVYKHKDDSK
101: KRIQVVVSPP GARVEFVGTN YTGEQAAMQT NTYRVGVFNR EAKTLRILPV AHNKIIRLEP RVKAQETNEE EASGSAVVKE LEELKTGERD RYNTKKAVTR
201: DKKKRALYMG DDAATQKVLD GKLSELGVNT AALEGTSSTV ARNIPPYNTA ATTANEAYPL EKIIEKGDWS FLEDIYWLLQ QETEAATEAY PVFVRNRLYR
301: LRDIKDDMKK QTVCGAATLL THLVKFKDRN SMNGYDSAKD HKMPDIFRQK FNSMFKDSES DRIPVDKINL LISYVLVLSL HVDNFMTDPE DIAKDLRIST
401: VELRKHFLQL GCKFLKQNST TVATLPTPLN FPEVNRRRRA RK

Arabidopsis Description

DNA binding / DNA-directed RNA polymerase [Source:UniProtKB/TrEMBL;Acc:Q9LVK6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.