Factsheet for PGSC0003DMT400006250

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400042035	Potato	nucleus	71.11	29.7
CDY71531	Canola	cytosol, nucleus	33.89	23.83
VIT_09s0002g01860.t01	Wine grape	nucleus	51.11	21.85
KRH12306	Soybean	nucleus	46.11	19.58
GSMUA_AchrUn_...	Banana	nucleus	38.89	16.51
TraesCS4A01G151300.1	Wheat	nucleus	38.33	16.39
TraesCS4D01G154400.1	Wheat	nucleus, plastid	37.22	15.91
Bra021519.1-P	Field mustard	nucleus	37.78	15.89
CDY67555	Canola	nucleus	37.78	15.85
TraesCS4B01G158200.1	Wheat	nucleus	36.67	15.68
AT3G13940.1	Thale cress	nucleus	38.33	15.61
Os11t0615100-01	Rice	nucleus	38.33	14.26
HORVU4Hr1G033420.3	Barley	nucleus	33.33	14.02
Zm00001d048834_P001	Maize	nucleus	38.33	13.72
OQU83842	Sorghum	nucleus	37.22	13.51

Protein Annotations

MapMan:15.2.5.2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0003899
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740
UniProt:M0ZR13	PFAM:PF06870	EnsemblPlantsGene:PGSC0003DMG400002436	PGSC:PGSC0003DMG400002436	EnsemblPlants:PGSC0003DMT400006250	PANTHER:PTHR14440
InterPro:RNA_pol-assoc_fac_A49-like	UniParc:UPI000296C19A	:	:	:	:

Description

DNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400002436]

Coordinates

chr1:+:47718975..47720146

Molecular Weight (calculated)

20781.1 Da

IEP (calculated)

7.413

GRAVY (calculated)

-0.115

Length

180 amino acids

Sequence
(BLAST)

001: MVDFGQHYEI RVLDGGSFIF VSLRMSSFFW KLNSLRQQED TRNQKEFDRN IAGEINKEAL EVVVTIDSTQ NKPPHDLDAI IPTKLTCFVK FSSMFAISDS
101: KRLPEEKATL LINYVLVLTL FADDFRSDPS DIANDLRINV VALRTYYEYL GCKLVREKNV VLATLLDPLV FPSVRRNIRR

Best Arabidopsis Sequence Match ( AT3G13940.1 )
(BLAST)

001: MEGEEKNDYR NEEEDFNTPQ QLQKKQRKGK KIATETEDEN EEDKRVTLKV TQVAERPDRI SPIVAYFSTG YDPCKVDPKT GKRVHETPKV TVYKHKDDSK
101: KRIQVVVSPP GARVEFVGTN YTGEQAAMQT NTYRVGVFNR EAKTLRILPV AHNKIIRLEP RVKAQETNEE EASGSAVVKE LEELKTGERD RYNTKKAVTR
201: DKKKRALYMG DDAATQKVLD GKLSELGVNT AALEGTSSTV ARNIPPYNTA ATTANEAYPL EKIIEKGDWS FLEDIYWLLQ QETEAATEAY PVFVRNRLYR
301: LRDIKDDMKK QTVCGAATLL THLVKFKDRN SMNGYDSAKD HKMPDIFRQK FNSMFKDSES DRIPVDKINL LISYVLVLSL HVDNFMTDPE DIAKDLRIST
401: VELRKHFLQL GCKFLKQNST TVATLPTPLN FPEVNRRRRA RK

Arabidopsis Description

DNA binding / DNA-directed RNA polymerase [Source:UniProtKB/TrEMBL;Acc:Q9LVK6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.